FC868930
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_ARATH (COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1 PE=1 SV=2) HSP 1 Score: 287.73 bits (735), Expect = 4.389e-77 Identity = 143/192 (74.48%), Postives = 166/192 (86.46%), Query Frame = 3 Query: 150 MEPEDEQSNSMMEEIYSNGGEESARTRPIISGEQLDVEAYASLYQGRTKITRLMFIADHCD-IVSMQLEALRMAYDEIKKGENTQLFREVVKKIDGRLGPNYAMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSIEMGQ 722 ME ++E S MME + +NGGEE++ RPIISGE LD+EAYA+LY+GRTKI RL+FIA+HC ++Q +ALRMAYDEIKKGENTQLFREVV KI RLG Y MD AWC++VDRRAEQ+K KLENEL++YRTNLIKESIRMGYNDFGDFYYA G LGDAF +Y+RTRDYCTT+KHIIHMCM+AILVSIEMGQ Sbjct: 1 MERDEEASGPMME-MCTNGGEETSNRRPIISGEPLDIEAYAALYKGRTKIMRLLFIANHCGGNHALQFDALRMAYDEIKKGENTQLFREVVNKIGNRLGEKYGMDLAWCEAVDRRAEQKKVKLENELSSYRTNLIKESIRMGYNDFGDFYYACGMLGDAFKNYIRTRDYCTTTKHIIHMCMNAILVSIEMGQ 191
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_DICDI (COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum GN=csn1 PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.096e-27 Identity = 59/155 (38.06%), Postives = 98/155 (63.23%), Query Frame = 3 Query: 249 QLDVEAYASLYQGRTKITRLMFIADHCDIVSMQLEALRMAYDEIKKGENTQLFREVVKKIDGRLGPNYAMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSIE 713 + D+E Y + Y G TKI RL+FIAD+C +++EA MA E++K N +L+ ++ K G L +D + +++ ++ + +KLE +LN ++N++K+SIR ND G+FYY G +A ++RTRDYCTTSKH++ MC + I + ++ Sbjct: 29 EFDLETYINNYSGFTKIHRLIFIADNCK--QLEVEAYNMALKEVQKTPNLELYNTIINKSHGIL----ELDPVYIENLSKKNSLQLDKLEQDLNTAKSNMVKDSIRFAQNDLGEFYYKIGDHQNALKCFIRTRDYCTTSKHVLAMCFNIIKLGVD 177
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_HUMAN (COP9 signalosome complex subunit 1 OS=Homo sapiens GN=GPS1 PE=1 SV=4) HSP 1 Score: 123.25 bits (308), Expect = 1.432e-27 Identity = 64/177 (36.16%), Postives = 102/177 (57.63%), Query Frame = 3 Query: 234 IISGEQLDVEAYASLYQGRTKITRLMFIADHCDIVSMQLEALRMAYDEIKKGENTQLFREVVKKIDGRLGPNY------------------AMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSI 710 ++ LD+E YA+ Y G +I RL FIADHC ++++EAL+MA +++ N ++ E+ +K+ + A+D AW ++ ++A + EKL+ +L Y+ N IKESIR G++D GD Y G L +A Y R RDYCT++KH+I+MC++ I VS+ Sbjct: 36 VVENPSLDLEQYAASYSGLMRIERLQFIADHCP--TLRVEALKMALSFVQRTFNVDMYEEIHRKLSEATRSSLRELQNAPDAIPESGVEPPALDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSV 210
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_XENLA (COP9 signalosome complex subunit 1 OS=Xenopus laevis GN=csn1 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.442e-27 Identity = 70/201 (34.83%), Postives = 113/201 (56.22%), Query Frame = 3 Query: 153 EPEDEQSNSMMEEIYSNGGEESARTRPIISGEQLDVEAYASLYQGRTKITRLMFIADHCDIVSMQLEALRMAYDEIKKGENTQLFREVVKKI---------------DGRLGPNYAMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSI 710 +P+D+Q N M + Y ++ LD+E YAS Y G +I RL FIAD C +++EAL+MA +++ N ++ ++ +K+ +G + P A+D +W ++ ++A + EKL+ +L Y+ N IKESIR G++D GD Y G L +A Y R RDYCT++KH+I+MC++ I VS+ Sbjct: 22 DPQDDQQN-MPDVNY------------VVENPTLDLEQYASSYSGLMRIERLQFIADRCP--QLRVEALKMALSFVQRTFNVDVYEDIHRKLAEASREVQNAPDAVPEGSMEPP-ALDTSWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSV 206
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_RAT (COP9 signalosome complex subunit 1 OS=Rattus norvegicus GN=Gps1 PE=1 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 6.015e-26 Identity = 63/173 (36.42%), Postives = 100/173 (57.80%), Query Frame = 3 Query: 234 IISGEQLDVEAYASLYQGRTKITRLMFIADHCDIVSMQLEALRMAYDEIKKGENTQLFREVVKKIDGRL-----GPNYA---------MDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSI 710 ++ LD+E YA+ Y G +I RL FIAD C +++EAL+MA +++ N ++ E+ +K+ P+ +D AW ++ ++A + EKL+ +L Y+ N IKESIR G++D GD Y G L +A Y R RDYCT++KH+I+MC++ I VS+ Sbjct: 20 VVENPTLDLEQYAASYSGLMRIERLQFIADRCP--PLRVEALKMALSFVQRTFNVDMYEEIHRKLSEATRELQNAPDAIPESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSV 190
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_MOUSE (COP9 signalosome complex subunit 1 OS=Mus musculus GN=Gps1 PE=1 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 6.015e-26 Identity = 63/173 (36.42%), Postives = 100/173 (57.80%), Query Frame = 3 Query: 234 IISGEQLDVEAYASLYQGRTKITRLMFIADHCDIVSMQLEALRMAYDEIKKGENTQLFREVVKKIDGRL-----GPNYA---------MDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSI 710 ++ LD+E YA+ Y G +I RL FIAD C +++EAL+MA +++ N ++ E+ +K+ P+ +D AW ++ ++A + EKL+ +L Y+ N IKESIR G++D GD Y G L +A Y R RDYCT++KH+I+MC++ I VS+ Sbjct: 20 VVENPTLDLEQYAASYSGLMRIERLQFIADRCP--PLRVEALKMALSFVQRTFNVDMYEEIHRKLSEATRELQNAPDAIPESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSV 190
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_DROME (COP9 signalosome complex subunit 1b OS=Drosophila melanogaster GN=CSN1b PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.811e-22 Identity = 68/241 (28.22%), Postives = 114/241 (47.30%), Query Frame = 3 Query: 135 LSPNAMEPEDEQSNSMMEEIYSNGGEESARTRPIISGEQLDVEAYASLYQGRTKITRLMFIADHCDIVSMQLEALRMAYDEIKKGENTQLFREVVKKID-------------------GRLGPN------------------------------YAMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSI 710 L NA+EP E+ E + + ++ +D+E YA+ Y G ++ RL+++AD C ++++ EAL+MA ++ N L++ + K++ G P +A D AW D+ ++A + EKL+++L Y++N IKESIR G++D D Y + G L +A Y R RDYCT+ KH+++MC++ I VSI Sbjct: 9 LMQNAVEPMQVDIAPPNED-----NENNEEQQIVVENPSIDLEVYANQYAGIVRLHRLIYVADVCPVLAV--EALKMAITYVQTTYNVNLYQVLHKRLSDLNAGNAPAPPANAGGDQAGAAAPGPLAAAPLPDIAAQPVAQAQGQAQPAVEKDAFAYDAAWVDTKMKKAALKLEKLDSDLKNYKSNSIKESIRRGHDDLADHYLSCGDLTNALKCYSRARDYCTSGKHVVNMCLNVIKVSI 242
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_EMENI (COP9 signalosome complex subunit 1 OS=Emericella nidulans GN=csnA PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 2.891e-20 Identity = 61/180 (33.89%), Postives = 93/180 (51.67%), Query Frame = 3 Query: 207 GEESARTRPIISGEQ---LDVEAYASLYQGRTKITRLMFIADHCDIVSMQLEALRMAYDEIKKGENTQLFREVVKKIDGRLGPNY---AMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSIEMGQLL 728 G S P++ E+ ++E+Y + Y GRT+ RL I +++ +AL+ A E K G++ + V+ + + PN +D W + + + ++LE+EL Y+ NLIKESIRMG + G Y+ G L AF +Y R RD+CTT HI M I V+IE G L Sbjct: 34 GLVSTSAAPLVRVEEAPKFELESYIANYTGRTRFNRLYLIGTCSSYLAV--DALKAAIAEAKSGKDVARYLRAVQAL-ADVAPNEPEATIDSDWVERSQKVVKAETDRLEHELRGYKNNLIKESIRMGNEELGQHYHRIGDLTSAFKAYSRMRDFCTTPSHIASMLFKIINVAIERGDWL 210
BLAST of FC868930 vs. ExPASy Swiss-Prot
Match: CSN1_SCHPO (COP9 signalosome complex subunit 1 OS=Schizosaccharomyces pombe GN=csn1 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13 Identity = 48/158 (30.38%), Postives = 80/158 (50.63%), Query Frame = 3 Query: 249 QLDVEAYASLYQGRTKITRLMFIADHCDIVSMQLEALRMAYDEIK-KGENTQLFREVVKKIDGRLGPNYAMDEAWCDSVDRRAEQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGALGDAF*SYVRTRDYCTTSKHIIHMCMSAILVSIEMG 719 Q +++ Y Y +KI R +F+A + ++ + A E+K K N +L++ + ++ N +D W +SV +Q E+L EL AY+ NLI+ESIR D F+ G A SY + R+YCT + I H+ + + +SI +G Sbjct: 9 QEELKRYLDEYGVWSKIFRALFVARNSK--PLRSFCVHYAIKELKEKTYNLELYQSLFEEFQDCF-ENEQLDVEWVESVTFHRKQNLEQLRRELKAYKNNLIRESIRAAQLDLASFFADVGQFDSALRSYAKVREYCTNAGQIAHLSLELMRISIWIG 163 The following BLAST results are available for this feature:
BLAST of FC868930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868930 ID=FC868930; Name=FC868930; organism=Citrus clementina; type=EST; length=745bpback to top |