FC868933

Overview
NameFC868933
Unique NameFC868933
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868933 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 5.521e-34
Identity = 60/140 (42.86%), Postives = 90/140 (64.29%), Query Frame = 3
Query:   99 SKMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAV 518
            +K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ V
Sbjct:   32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQV 171          

HSP 2 Score: 43.8986 bits (102), Expect = 5.521e-34
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1
Query:  586 LFDLQVETFGAMAKTEKIAFILEQVRLCLDRQD 684
            L +LQVET+G+M K E++ FILEQ+RLCL  +D
Sbjct:  166 LQELQVETYGSMEKKERVEFILEQMRLCLAVKD 198          
BLAST of FC868933 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 5.521e-34
Identity = 60/140 (42.86%), Postives = 90/140 (64.29%), Query Frame = 3
Query:   99 SKMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAV 518
            +K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ V
Sbjct:   32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQV 171          

HSP 2 Score: 43.8986 bits (102), Expect = 5.521e-34
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1
Query:  586 LFDLQVETFGAMAKTEKIAFILEQVRLCLDRQD 684
            L +LQVET+G+M K E++ FILEQ+RLCL  +D
Sbjct:  166 LQELQVETYGSMEKKERVEFILEQMRLCLAVKD 198          
BLAST of FC868933 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 5.521e-34
Identity = 61/139 (43.88%), Postives = 89/139 (64.03%), Query Frame = 3
Query:  102 KMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAV 518
            K+  +G L+  ++ LL+ EKQ R + D+  T + +  I+++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ V
Sbjct:   33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAIVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQV 171          

HSP 2 Score: 43.8986 bits (102), Expect = 5.521e-34
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1
Query:  586 LFDLQVETFGAMAKTEKIAFILEQVRLCLDRQD 684
            L +LQVET+G+M K E++ FILEQ+RLCL  +D
Sbjct:  166 LQELQVETYGSMEKKERVEFILEQMRLCLAVKD 198          
BLAST of FC868933 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 3.509e-33
Identity = 59/139 (42.45%), Postives = 88/139 (63.31%), Query Frame = 3
Query:  102 KMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAV 518
            K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W   NE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ V
Sbjct:   33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLHNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQV 171          

HSP 2 Score: 43.8986 bits (102), Expect = 3.509e-33
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1
Query:  586 LFDLQVETFGAMAKTEKIAFILEQVRLCLDRQD 684
            L +LQVET+G+M K E++ FILEQ+RLCL  +D
Sbjct:  166 LQELQVETYGSMEKKERVEFILEQMRLCLAVKD 198          
BLAST of FC868933 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.315e-32
Identity = 67/151 (44.37%), Postives = 93/151 (61.59%), Query Frame = 3
Query:   81 SPAIIKSKMEGK-----GNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAV 518
            SP   KS  E +     G L   ++ LL TEKQ R + D   T K   EI++LC+EA     +NE++V LSK+RGQL+          M Y+DQ  D+  ++ELI TL ++S GKI+VE ERARL K L+KIKE++G IA AA ++Q++ V
Sbjct:   22 SPIADKSCKENRELAKSGKLIEAIENLLITEKQCRQAEDSPSTSKIAAEIIKLCYEAGRLDLVNEKLVLLSKRRGQLRPAIKAIVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQV 172          

HSP 2 Score: 44.2838 bits (103), Expect = 1.315e-32
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 1
Query:  586 LFDLQVETFGAMAKTEKIAFILEQVRLCLDRQD 684
            L DLQVET+G M K EKI F ++Q+R+C++ +D
Sbjct:  167 LQDLQVETYGTMEKREKITFFIDQMRICMNNKD 199          
BLAST of FC868933 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 4.178e-27
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = 3
Query:  114 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXMQYIDQTP--DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAV 518
            + +  + +DQLL  EK+ R + D+A +K+ + +I+ L      W  LNEQ+  LSKK GQLK          M+Y+  +   DL+TRI +I+T+  V+  KI+VE+ERAR+ K L +IK+E+G I EAAD++ E+ V
Sbjct:   29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQV 165          

HSP 2 Score: 38.891 bits (89), Expect = 4.178e-27
Identity = 19/35 (54.29%), Postives = 26/35 (74.29%), Query Frame = 1
Query:  586 LFDLQVETFGAMAKTEKIAFILEQVRLCLDRQDMS 690
            L +LQVET+G+M  +EKI FILEQ+ L + + D S
Sbjct:  160 LCELQVETYGSMEMSEKIQFILEQMELSILKGDYS 194          
BLAST of FC868933 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.645e-26
Identity = 56/128 (43.75%), Postives = 83/128 (64.84%), Query Frame = 3
Query:  120 NLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXMQYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLM 503
            +++A +++LL  EKQ+R + D +   K +  I  L F A D++ LNEQ+V+L KK GQLK          M Y+    DL T+I LI+TL +++ GKIYVE+ERARL + L++IKEEQG I  A +++
Sbjct:   27 DIDANLEKLLIFEKQVRQASDTSTNTKVLIYIADLLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEIL 154          

HSP 2 Score: 35.039 bits (79), Expect = 2.645e-26
Identity = 17/28 (60.71%), Postives = 21/28 (75.00%), Query Frame = 1
Query:  601 VETFGAMAKTEKIAFILEQVRLCLDRQD 684
            VET+G+    EK+AFIL+QVRL L R D
Sbjct:  159 VETYGSFDLKEKVAFILDQVRLFLLRSD 186          
The following BLAST results are available for this feature:
BLAST of FC868933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSD12_PONAB5.521e-3442.8626S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_HUMAN5.521e-3442.8626S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_BOVIN5.521e-3443.8826S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_MOUSE3.509e-3342.4526S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_DICDI1.315e-3244.3726S proteasome non-ATPase regulatory subunit 12 OS... [more]
RPN5_YEAST4.178e-2740.8826S proteasome regulatory subunit RPN5 OS=Saccharo... [more]
RPN5_SCHPO2.645e-2643.7526S proteasome regulatory subunit rpn5 OS=Schizosa... [more]
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Properties
Property NameValue
Genbank descriptionC31006F10EF AbioticL1 Citrus clementina cDNA clone C31006F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868933 ID=FC868933; Name=FC868933; organism=Citrus clementina; type=EST; length=701bp
GACCGAATCAGAATCCCTCTCTGAACTCACTCTCTGAAAATTAGGGTTTT
TTCCCCCTTATTTAACAATTTTGGGCATAATCTCCGGCGATTATCAAATC
GAAGATGGAGGGTAAAGGCAATTTGGAGGCGCAAGTAGATCAGCTTTTGA
ATACCGAGAAGCAGATGAGATTATCCGGTGACGTGGCCGGCACCAAGAAG
GCGGTGACGGAAATTTTGCAGCTTTGCTTTGAAGCTAAAGACTGGAAGAC
TCTCAATGAACAGATTGTTAATCTTTCCAAGAAACGCGGTCAACTCAAGC
AGGCTGTAACTGCAGTGGTCCAGCAAGCAATGCAGTACATCGATCAGACG
CCAGATCTTGATACTCGTATAGAGCTCATCAAAACACTAAATAGTGTCTC
TGCAGGGAAGATATATGTTGAAATTGAGAGGGCAAGGTTGATTAAAAAAC
TTGCAAAGATTAAGGAAGAACAAGGGCTTATAGCGGAAGCTGCAGATCTG
ATGCAAGAAGTGGCTGTAAGTATCCTCTGTCTTTTTGGTTATAGGTTTCA
TATATTTTCTTCTGTGGTGGTATTCTCTGTAATGCCTTTTTGATTTACAG
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATCGCCTTCATTCT
TGAACAAGTCCGTCTGTGCCTAGACCGCCAAGATATGTCCGTGCACAAAT
T
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