FC868939

Overview
NameFC868939
Unique NameFC868939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9480 contig Ccv1_Contig9480:19..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868939 vs. ExPASy Swiss-Prot
Match: E134_MAIZE (Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.917e-35
Identity = 82/194 (42.27%), Postives = 116/194 (59.79%), Query Frame = 2
Query:   74 SQCFENPPKLSPGSG--CGAGTVQQ--LGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHDIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEIL 643
            SQC +NPP  S        AG V     GGL  YV+G+    S  A++L SDVFGYEAPL R++ DKVA AG+ VV PDF  GD + D  N       W + H+  K   DAK + AALK +G S +   G+CWGG ++ ++  + D++A  + HP ++T DD+ E+K P+ ILGA+ D  +PP+++ RF  +L
Sbjct:   27 SQCLDNPPDRSIHGRQLAEAGEVVHDLPGGLRAYVSGAA--SSSRAVVLASDVFGYEAPLLRQIVDKVAKAGYFVVVPDFLKGDYLDDKKN----FTEWLEAHSPVKAAEDAKPLFAALKKEGKS-VAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVL 213          
BLAST of FC868939 vs. ExPASy Swiss-Prot
Match: CMBL_MOUSE (Carboxymethylenebutenolidase homolog OS=Mus musculus GN=Cmbl PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20
Identity = 62/188 (32.98%), Postives = 96/188 (51.06%), Query Frame = 2
Query:  122 GAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKNDCLVKY 679
            G G   Q+  +  YVT S P D+  A++++ D+FG++ P  R +AD +A  G+  + PDFF G    D         AW K  N  K   +  +V+  L+ +     IG  GFCWGGVV  ++ +++ DI+A V ++      +D+  +K P   + AE D V P E +      L+ KLK  C+V Y
Sbjct:   20 GMGHEVQVEHIKAYVTRS-PVDAGKAVIVVQDIFGWQLPNTRYMADMIARNGYTTIVPDFFVGQEPWDPAGDWSTFPAWLKSRNARKVNREVDAVLRYLRQQCHAQKIGIVGFCWGGVVVHQVMTAYPDIRAGVSVYGIIRDSEDVYNLKNPTLFIFAENDTVIPLEQV----STLTQKLKEHCIVNY 202          
BLAST of FC868939 vs. ExPASy Swiss-Prot
Match: CMBL_PONAB (Carboxymethylenebutenolidase homolog OS=Pongo abelii GN=CMBL PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.218e-19
Identity = 60/190 (31.58%), Postives = 95/190 (50.00%), Query Frame = 2
Query:  122 GAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKNDCLVKYTL 685
            G G   Q+  +  YVT S P D+  A+++I D+FG++ P  R +AD ++G G+  + PDFF G    D +        W K  N  K   +  +++  LK +     IG  GFCWGG+    L   + + +A V ++      +DI  +K P   + AE D V P +D+     +L+ KLK  C V+Y +
Sbjct:   20 GLGREVQVEHIKAYVTKS-PVDAGKAVIVIQDIFGWQLPNTRYMADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWGGIAVHHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDVVIPLKDV----SLLTQKLKEHCKVEYQI 204          
BLAST of FC868939 vs. ExPASy Swiss-Prot
Match: CMBL_RAT (Carboxymethylenebutenolidase homolog OS=Rattus norvegicus GN=Cmbl PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 60/188 (31.91%), Postives = 94/188 (50.00%), Query Frame = 2
Query:  122 GAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKNDCLVKY 679
            G G   Q+  +  YVT S P D+  A++++ D+FG++    R +AD +AG G+  + PDFF G    D          W K  N  K   +  +V+  LK +     IG  GFCWGG+V   + +++ +++A V ++      +D+  +K P   + AE D V P E +     IL  KLK  C+V Y
Sbjct:   20 GMGQEVQVEHIKAYVTRS-PVDAGKAVIVVQDIFGWQLSNTRYMADMIAGNGYTTIVPDFFVGQEPWDPAGDWSTFPEWLKSRNARKINREVDAVLRYLKQQCHAQKIGIVGFCWGGIVVHHVMTTYPEVRAGVSVYGIIRDSEDVYNLKNPTLFIFAENDAVIPLEQV----SILIQKLKEHCIVNY 202          
BLAST of FC868939 vs. ExPASy Swiss-Prot
Match: CMBL_HUMAN (Carboxymethylenebutenolidase homolog OS=Homo sapiens GN=CMBL PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 60/190 (31.58%), Postives = 94/190 (49.47%), Query Frame = 2
Query:  122 GAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKNDCLVKYTL 685
            G G   Q+  +  YVT S P D+  A+++I D+FG++ P  R +AD ++G G+  + PDFF G    D +        W K  N  K   +  +++  LK +     IG  GFCWGG     L   + + +A V ++      +DI  +K P   + AE D V P +D+     +L+ KLK  C V+Y +
Sbjct:   20 GLGREVQVEHIKAYVTKS-PVDAGKAVIVIQDIFGWQLPNTRYIADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWGGTAVHHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDVVIPLKDV----SLLTQKLKEHCKVEYQI 204          
BLAST of FC868939 vs. ExPASy Swiss-Prot
Match: AIM2_YEAST (Protein AIM2 OS=Saccharomyces cerevisiae GN=AIM2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 61/189 (32.28%), Postives = 93/189 (49.21%), Query Frame = 2
Query:   62 NMSGSQCFENPPKLSPGSGCGAGTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTD--KGYVDAKSVIAALKSKGVSAIGAAGFCWGGVVAAKLASSHD--IQAAVVLHPGAITVDDINEI--KVPVAILGAEIDHVSP 610
            N  G  CFE         G   G  +++ GL+TY  GS  P  K  I++++DV+G +       ADK A AG++V  PD  +GD I   ++   DR+AW + H+ +  K  VD    +  L+      IG  G+C+G   A +  S       AA + HP  +++++I  I  K P+ I  AE DH+ P
Sbjct:    4 NQPGKCCFEGVCH----DGTPKGRREEIFGLDTYAAGSTSPKEK-VIVILTDVYGNKFNNVLLTADKFASAGYMVFVPDILFGDAI--SSDKPIDRDAWFQRHSPEVTKKIVDGFMKLLKLE-YDPKFIGVVGYCFGAKFAVQHISGDGGLANAAAIAHPSFVSIEEIEAIDSKKPILISAAEEDHIFP 184          
BLAST of FC868939 vs. ExPASy Swiss-Prot
Match: CMBL_XENTR (Carboxymethylenebutenolidase homolog OS=Xenopus tropicalis GN=cmbl PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 55/185 (29.73%), Postives = 86/185 (46.49%), Query Frame = 2
Query:  128 GTVQQLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKNDCLVK 676
            G   Q+  +  YV+       K A++++ D+FG++ P  R +AD +   G++ + PDFF G      +N +     W +     K   +   V+  LK +  V  IG  GFCWGGVV   L   + +++A V  +     V+D   +  P   + AE+DHV P E +    E L    K D  VK
Sbjct:   22 GQEVQIEHIKAYVSKPHSSTDK-AVIVVQDIFGWQLPNTRFMADLLTAHGYITICPDFFVGQEPWKPSNDRSTFTEWLQTRQATKVEKEINVVLKYLKEQCHVKKIGVIGFCWGGVVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEMDHVIPLEQVSLLEEKLKVHSKVDFQVK 205          
BLAST of FC868939 vs. ExPASy Swiss-Prot
Match: CMBL_XENLA (Carboxymethylenebutenolidase homolog OS=Xenopus laevis GN=cmbl PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14
Identity = 53/181 (29.28%), Postives = 84/181 (46.41%), Query Frame = 2
Query:  140 QLGGLNTYVTGSGPPDSKSAILLISDVFGYEAPLFRKLADKVAGAGFLVVAPDFFYGDPIVDLNNPQFDREAWRKIHNTDKGYVDAKSVIAALKSK-GVSAIGAAGFCWGGVVAAKLASSH-DIQAAVVLHPGAITVDDINEIKVPVAILGAEIDHVSPPEDLKRFGEILSAKLKNDCLVK 676
            Q+  +  YV+       K A++++ D+FG++ P  R +AD +   G++ + PDFF G      +N       W +     K   +   V+  LK +  V  IG  GFCWGGVV   L   + +++A V  +     V+D   +  P   + AEIDHV P E +    + L    K D  +K
Sbjct:   26 QIEHIKAYVSKPHSSTDK-AVIVVQDIFGWQLPNTRFMADLLTAHGYITICPDFFVGQESWKPSNDWSTFTEWLQTRQATKVEKEMNVVLKYLKEQCHVKKIGVIGFCWGGVVTHHLMLKYPELKAGVSFYGIIRDVEDRYNLLNPTLFIFAEIDHVIPLEQVSLLEQKLKVHSKVDFQIK 205          
The following BLAST results are available for this feature:
BLAST of FC868939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
E134_MAIZE4.917e-3542.27Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=... [more]
CMBL_MOUSE5.836e-2032.98Carboxymethylenebutenolidase homolog OS=Mus muscul... [more]
CMBL_PONAB2.218e-1931.58Carboxymethylenebutenolidase homolog OS=Pongo abel... [more]
CMBL_RAT4.940e-1931.91Carboxymethylenebutenolidase homolog OS=Rattus nor... [more]
CMBL_HUMAN4.940e-1931.58Carboxymethylenebutenolidase homolog OS=Homo sapie... [more]
AIM2_YEAST1.345e-1632.28Protein AIM2 OS=Saccharomyces cerevisiae GN=AIM2 P... [more]
CMBL_XENTR4.328e-1529.73Carboxymethylenebutenolidase homolog OS=Xenopus tr... [more]
CMBL_XENLA1.259e-1429.28Carboxymethylenebutenolidase homolog OS=Xenopus la... [more]
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Properties
Property NameValue
Genbank descriptionC31006G05EF AbioticL1 Citrus clementina cDNA clone C31006G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868939 ID=FC868939; Name=FC868939; organism=Citrus clementina; type=EST; length=700bp
GAGATTCCCTCCATTTCTTCCGTCGGTAATACAGTTAATTCCATTATCGA
ATTTGGGTTTGAATATGTCAGGCTCACAGTGCTTTGAGAACCCACCAAAG
CTGAGCCCGGGTTCGGGTTGTGGAGCTGGGACTGTACAGCAACTCGGTGG
CCTCAACACTTATGTGACCGGGTCTGGTCCTCCAGATTCCAAGTCTGCTA
TTCTTCTCATTTCTGACGTTTTTGGGTATGAAGCTCCTCTTTTCAGGAAA
CTTGCCGACAAAGTTGCCGGTGCTGGATTCTTAGTTGTGGCTCCTGATTT
CTTTTATGGCGACCCTATTGTTGATCTGAACAACCCTCAGTTTGATCGAG
AGGCCTGGAGAAAAATTCATAACACGGACAAAGGTTATGTAGATGCCAAA
TCAGTAATTGCTGCTTTGAAAAGTAAAGGTGTATCTGCCATAGGGGCAGC
AGGTTTTTGCTGGGGAGGCGTTGTAGCTGCAAAATTGGCAAGTTCTCATG
ATATTCAGGCTGCTGTTGTGTTGCATCCTGGTGCCATCACAGTCGATGAT
ATAAATGAGATTAAAGTTCCAGTTGCTATTTTGGGAGCTGAGATTGATCA
CGTTTCCCCACCAGAAGATCTGAAACGTTTTGGAGAAATATTATCTGCAA
AACTGAAGAATGACTGCCTTGTGAAATATACCCTCGTGTATCTCATGGAT
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