FC868955

Overview
NameFC868955
Unique NameFC868955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8312 contig Ccv1_Contig8312:322..1042. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK57_ARATH (Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.187e-53
Identity = 112/213 (52.58%), Postives = 129/213 (60.56%), Query Frame = 2
Query:   38 SYILSEFGWNLQEHESSTSYFAADHERSDLAGNISSSFPAETTTDGGGLTNPGRXXXXXXXXXXXXXXXXXXXXXXXTGSGGK--PPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLIN-HEAAAFASHLTHAIP-----PYYYHQ 652
            S ILS+FGWNL            D + +   G      P   T+                                 T S  K  PPE P K +KK QKRIRQPRFAFMTKS+VD+LEDGYRWRKYGQKAVKNSPFPRSYYRCTNS+CTVKKRVERSS+DP+IVITTYEGQHCH T+GFPRGG++  H+  +F SH  H +P     PYYY +
Sbjct:   34 SNILSDFGWNLHHSSDHPHSLRFDSDLTQTTG----VKPTTVTSSCSSSAAVSVAVTSTNNNPSATSSSSEDPAENSTASAEKTPPPETPVKEKKKAQKRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQHCHQTIGFPRGGILTAHDPHSFTSH--HHLPPPLPNPYYYQE 240          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.767e-35
Identity = 76/141 (53.90%), Postives = 94/141 (66.67%), Query Frame = 2
Query:  272 GSGGKPPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRG-----GLINHEAAAFASHLTHAIPPYYYHQGVQITQETP 679
            G G    ++  + +KKG+K+ R+ R AFMTKSE+DHLEDGYRWRKYGQKAVKNSP+PRSYYRCT  KC VKKRVERS +DP+IVITTYEG+H H      RG      L+ H        L H+ P   +HQ   + + +P
Sbjct:   99 GVGESSKQLTKQGKKKGEKKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGKHNHPIPSTLRGTVAAEHLLVHRGG--GGSLLHSFP--RHHQDFLMMKHSP 235          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.142e-35
Identity = 75/128 (58.59%), Postives = 92/128 (71.88%), Query Frame = 2
Query:  281 GKPPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGL------INHEAAAFASHLTHAIPPYYY 646
            G  P++  KA+KK QK+ R+ RFAF+TKS++D+L+DGYRWRKYGQKAVKNSP+PRSYYRCT   C VKKRVERSS+DP+IV+TTYEGQH H     PRG +      I    A  AS  + +IP   Y
Sbjct:  189 GTKPQL--KAKKKNQKKAREARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHTHPFPMTPRGHIGMLTSPILDHGATTASSSSFSIPQPRY 314          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.333e-34
Identity = 66/83 (79.52%), Postives = 71/83 (85.54%), Query Frame = 2
Query:  305 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            KA+K  QKR R+ R AFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCT + C VKKRVERS  DP+ V+TTYEGQH H
Sbjct:  148 KAKKNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTH 230          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.353e-34
Identity = 71/105 (67.62%), Postives = 81/105 (77.14%), Query Frame = 2
Query:  305 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAAFASHL 619
            K +K   K+ R+PR +FMTKSEVDHLEDGYRWRKYGQKAVKNSP+PRSYYRCT  KC VKKRVERS +DPT+VITTYEGQH H      RG   +  AA F++ L
Sbjct:  146 KTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHPIPTNLRGS--SAAAAMFSADL 248          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRKY8_ARATH (Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.072e-32
Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = 2
Query:  305 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            K +KK +K+ ++PR +FMTK+EVDHLEDGYRWRKYGQKAVKNSP+PRSYYRCT  KC VKKRVERS +DPT+VITTYE QH H
Sbjct:  158 KTKKKEEKK-KEPRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTVVITTYESQHNH 239          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK13_ARATH (Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.038e-27
Identity = 54/79 (68.35%), Postives = 65/79 (82.28%), Query Frame = 2
Query:  317 KGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            K ++++R+PRF F T SEVD L+DGYRWRKYGQK VKN+  PRSYYRCT  KC VKKRVER ++DP +VITTYEG+H H
Sbjct:  201 KTRRKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLH 279          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK12_ARATH (Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.154e-27
Identity = 55/83 (66.27%), Postives = 68/83 (81.93%), Query Frame = 2
Query:  305 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            K + K ++++R+PRF F TKS+VD L+DGY+WRKYGQK VKNS  PRSYYRCT++ C VKKRVER SED  +VITTYEG+H H
Sbjct:  119 KNKVKIRRKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 201          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK68_ARATH (Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.791e-27
Identity = 60/113 (53.10%), Postives = 81/113 (71.68%), Query Frame = 2
Query:  308 ARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH--HTVGFPRGGLINHEAAAFASHL-THAIPP 637
            +RK+ +K++  P+ +F+T+SEV HL+DGY+WRKYGQK VK+SPFPR+YYRCT + C VKKRVERS  DP+ VITTYEGQH H    +  P+ G      +A  +H+    +PP
Sbjct:   95 SRKQTKKKV--PKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKKRVERSFSDPSSVITTYEGQHTHPRPLLIMPKEGSSPSNGSASRAHIGLPTLPP 205          
BLAST of FC868955 vs. ExPASy Swiss-Prot
Match: WRK45_ARATH (Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.719e-26
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 2
Query:  305 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 553
            K R K +K+ R+ R+AF T+S+VD L+DGYRWRKYGQKAVKN+PFPRSYY+CT   C VKK+V+R   D  +V+TTY+G H H
Sbjct:   39 KPRSKKKKKEREARYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVVVTTYQGVHTH 121          
The following BLAST results are available for this feature:
BLAST of FC868955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
WRK57_ARATH4.187e-5352.58Probable WRKY transcription factor 57 OS=Arabidops... [more]
WRK71_ARATH1.767e-3553.90Probable WRKY transcription factor 71 OS=Arabidops... [more]
WRK48_ARATH5.142e-3558.59Probable WRKY transcription factor 48 OS=Arabidops... [more]
WRK23_ARATH3.333e-3479.52Probable WRKY transcription factor 23 OS=Arabidops... [more]
WRK28_ARATH4.353e-3467.62Probable WRKY transcription factor 28 OS=Arabidops... [more]
WRKY8_ARATH1.072e-3275.90Probable WRKY transcription factor 8 OS=Arabidopsi... [more]
WRK13_ARATH1.038e-2768.35Probable WRKY transcription factor 13 OS=Arabidops... [more]
WRK12_ARATH5.154e-2766.27Probable WRKY transcription factor 12 OS=Arabidops... [more]
WRK68_ARATH8.791e-2753.10Probable WRKY transcription factor 68 OS=Arabidops... [more]
WRK45_ARATH9.719e-2661.45Probable WRKY transcription factor 45 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC31007A01EF AbioticL1 Citrus clementina cDNA clone C31007A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868955 ID=FC868955; Name=FC868955; organism=Citrus clementina; type=EST; length=721bp
CTGGAAGCTAGGGTCGCCACCGGACGCGGGCTGCGTGAGTTATATTTTGA
GCGAGTTTGGATGGAATCTGCAAGAGCATGAGAGTTCGACCAGCTACTTC
GCTGCTGATCATGAAAGATCCGATTTGGCGGGAAATATCAGCAGCAGTTT
TCCGGCCGAAACTACTACTGACGGTGGCGGTTTGACAAATCCTGGAAGGT
CTGCTGACGTGTCGACTTCGAATCCGTCGGTTTCGTCGAGCTCCAGCGAG
GATCCGACGGAGAAGTCTACGGGCTCCGGCGGTAAACCTCCTGAGATACC
AAGCAAAGCAAGAAAGAAAGGACAAAAGCGAATTCGGCAGCCACGTTTTG
CATTTATGACCAAGAGTGAAGTTGATCACCTTGAAGATGGATACAGATGG
CGAAAGTATGGTCAGAAGGCTGTAAAAAATAGTCCGTTCCCTAGGAGCTA
CTACCGCTGCACAAACAGTAAATGTACAGTGAAGAAGAGGGTGGAACGAT
CATCTGAAGATCCCACCATTGTAATTACTACGTATGAAGGTCAACACTGC
CATCATACCGTTGGATTTCCTCGTGGTGGACTAATTAATCATGAAGCAGC
TGCTTTTGCTAGCCATTTGACTCACGCAATCCCACCATATTATTATCATC
AAGGAGTTCAGATAACCCAAGAAACTCCCGGTATCAAGCAGCAGTCACAT
GAAGAAGAATTAATCCAGTTG
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