FC868965

Overview
NameFC868965
Unique NameFC868965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9454 contig Ccv1_Contig9454:235..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868965 vs. ExPASy Swiss-Prot
Match: IDND_VITVI (L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSVIVT00012394001 PE=1 SV=2)

HSP 1 Score: 281.567 bits (719), Expect = 2.504e-75
Identity = 135/181 (74.59%), Postives = 156/181 (86.19%), Query Frame = 1
Query:  118 MGKGGMSQGE---KKDGEEVNMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVI*KVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLPAGAMCEPLSVGLHDCRRAD 651
            MGKGG S+     K+ GEE NMAAWL+G+ TLKIQP+ LPSLGPYDV VR+KAVGICGSDVH+ KT+RCA+F+VK+PMVIGHECAG+I +VGSEVK LV GDRVALEPGISC RC  C+ G+YNLC EMKFF +PP +GSLANQVVHP++LCFKLPDNVSL  GAMCEPLSVG+H CRRA+
Sbjct:    1 MGKGGNSEDAVSGKEHGEE-NMAAWLLGIKTLKIQPYILPSLGPYDVKVRIKAVGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKNLVAGDRVALEPGISCNRCSLCRNGQYNLCREMKFFGSPPTNGSLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHACRRAN 180          
BLAST of FC868965 vs. ExPASy Swiss-Prot
Match: DHSO_MOUSE (Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 5.630e-43
Identity = 84/159 (52.83%), Postives = 112/159 (70.44%), Query Frame = 1
Query:  169 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVI*KVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLPAGAMCEPLSVGLHDCRR 645
            N++  + G   ++++ + +P LGP DVL++M +VGICGSDVHY +  R  DFVVK+PMV+GHE AG + KVG  VK L PGDRVA+EPG+     ++CK GRYNL P + F ATPP  G+L     H AD C+KLPD+V+   GA+ EPLSVG++ CRR
Sbjct:    9 NLSLVVHGPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGELVKHLKPGDRVAIEPGVPREVDEYCKIGRYNLTPTIFFCATPPDDGNLCRFYKHNADFCYKLPDSVTFEEGALIEPLSVGIYACRR 167          
BLAST of FC868965 vs. ExPASy Swiss-Prot
Match: DHSO_RAT (Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4)

HSP 1 Score: 173.711 bits (439), Expect = 7.353e-43
Identity = 84/159 (52.83%), Postives = 111/159 (69.81%), Query Frame = 1
Query:  169 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVI*KVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLPAGAMCEPLSVGLHDCRR 645
            N++  + G   ++++ + +P LGP DVL++M +VGICGSDVHY +  R  DFVVK+PMV+GHE AG + KVG  VK L PGDRVA+EPG+     + CK GRYNL P + F ATPP  G+L     H AD C+KLPD+V+   GA+ EPLSVG++ CRR
Sbjct:    9 NLSLVVHGPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGPMVKHLKPGDRVAIEPGVPREIDEFCKIGRYNLTPSIFFCATPPDDGNLCRFYKHSADFCYKLPDSVTFEEGALIEPLSVGIYACRR 167          
BLAST of FC868965 vs. ExPASy Swiss-Prot
Match: DHSO_MACFA (Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 9.603e-43
Identity = 83/159 (52.20%), Postives = 110/159 (69.18%), Query Frame = 1
Query:  169 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVI*KVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLPAGAMCEPLSVGLHDCRR 645
            N++  + G   L+++ + +P  GP +VL+RM +VGICGSDVHY +  R  +F+VK+PMV+GHE +G + KVGS VK L PGDRVA+EPG+     + CK GRYNL P + F ATPP  G+L     H A  C+KLPDNV+   GA+ EPLSVG+H CRR
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEEGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGVPRENDEFCKSGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRR 167          
BLAST of FC868965 vs. ExPASy Swiss-Prot
Match: DHSO_BOVIN (Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.794e-42
Identity = 84/160 (52.50%), Postives = 111/160 (69.38%), Query Frame = 1
Query:  169 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVI*KVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLPAGAMCEPLSVGLHDCRRA 648
            N++  + G   L+++ + +P  GP +VL++M +VGICGSDVHY +  R  DFVVK+PMV+GHE +G + KVGS V+ L PGDRVA+EPG      + CK GRYNL P + F ATPP  G+L     H A+ C+KLPDNV+   GA+ EPLSVG+H CRRA
Sbjct:    8 NLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIEPGAPRETDEFCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRA 167          
BLAST of FC868965 vs. ExPASy Swiss-Prot
Match: DHSO_PONAB (Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.649e-42
Identity = 84/159 (52.83%), Postives = 109/159 (68.55%), Query Frame = 1
Query:  169 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVI*KVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLPAGAMCEPLSVGLHDCRR 645
            N++  + G   L+++ + +P  GP +VL+RM +VGICGSDVHY +  R  +F+VK+PMV+GHE +G + KVGS VK L PGDRVA+EPG      + CK GRYNL P + F ATPP  G+L     H A  C+KLPDNV+   GAM EPLSVG+H CRR
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEDGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGAPRENDEFCKIGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGAMIEPLSVGIHACRR 167          
BLAST of FC868965 vs. ExPASy Swiss-Prot
Match: DHSO_HUMAN (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 3.649e-42
Identity = 83/159 (52.20%), Postives = 109/159 (68.55%), Query Frame = 1
Query:  169 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVI*KVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLPAGAMCEPLSVGLHDCRR 645
            N++  + G   L+++ + +P  GP +VL+RM +VGICGSDVHY +  R  +F+VK+PMV+GHE +G + KVGS VK L PGDRVA+EPG      + CK GRYNL P + F ATPP  G+L     H A  C+KLPDNV+   GA+ EPLSVG+H CRR
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRR 167          
BLAST of FC868965 vs. ExPASy Swiss-Prot
Match: DHSO_SHEEP (Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.035e-41
Identity = 83/160 (51.88%), Postives = 111/160 (69.38%), Query Frame = 1
Query:  169 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVI*KVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLPAGAMCEPLSVGLHDCRRA 648
            N++  + G   L+++ + +P  GP +VL++M +VGICGSDVHY +  R  DFVVK+PMV+GHE +G + KVGS V+ L PGDRVA++PG      + CK GRYNL P + F ATPP  G+L     H A+ C+KLPDNV+   GA+ EPLSVG+H CRRA
Sbjct:    7 NLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQG-RIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRA 165          
BLAST of FC868965 vs. ExPASy Swiss-Prot
Match: DHSO_BACSU (Sorbitol dehydrogenase OS=Bacillus subtilis GN=gutB PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 4.175e-38
Identity = 72/157 (45.86%), Postives = 102/157 (64.97%), Query Frame = 1
Query:  175 AAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVI*KVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLPAGAMCEPLSVGLHDCRR 645
            AA +     +KI+   +P +   +VL+++ AVGICGSD+HY    R  ++VV++P ++GHECAG I  VGS V     GDRVA+EPG++C RC+ CK GRYNLCP+++F ATPPV G+    +    D  F +PD++S    A+ EP SVG+H   R
Sbjct:   11 AAVMHNTREIKIETLPVPDINHDEVLIKVMAVGICGSDLHYYTNGRIGNYVVEKPFILGHECAGEIAAVGSSVDQFKVGDRVAVEPGVTCGRCEACKEGRYNLCPDVQFLATPPVDGAFVQYIKMRQDFVFLIPDSLSYEEAALIEPFSVGIHAAAR 167          
BLAST of FC868965 vs. ExPASy Swiss-Prot
Match: DHSO_SCHPO (Putative sorbitol dehydrogenase OS=Schizosaccharomyces pombe GN=tms1 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.754e-36
Identity = 70/137 (51.09%), Postives = 92/137 (67.15%), Query Frame = 1
Query:  241 YDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVI*KVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLPAGAMCEPLSVGLHDCRRAD 651
            + V V +KA GICGSDVHY K     DF++K+PM++GHE AGV+ +VG  V +L PGD VA+EPG  C  CD+C+ GRYNLCP M+F ATPP  G+L    +   D C KLP  +S+  GA+ EP+SV +H   R +
Sbjct:   30 HQVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGDPVAVEPGCVCRLCDYCRSGRYNLCPHMEFAATPPYDGTLRTYYITTEDFCTKLPKQISVEEGALFEPMSVAVHAMTRGN 166          
The following BLAST results are available for this feature:
BLAST of FC868965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
IDND_VITVI2.504e-7574.59L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSV... [more]
DHSO_MOUSE5.630e-4352.83Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=... [more]
DHSO_RAT7.353e-4352.83Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sor... [more]
DHSO_MACFA9.603e-4352.20Sorbitol dehydrogenase OS=Macaca fascicularis GN=S... [more]
DHSO_BOVIN2.794e-4252.50Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 ... [more]
DHSO_PONAB3.649e-4252.83Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=... [more]
DHSO_HUMAN3.649e-4252.20Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=... [more]
DHSO_SHEEP4.035e-4151.88Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 ... [more]
DHSO_BACSU4.175e-3845.86Sorbitol dehydrogenase OS=Bacillus subtilis GN=gut... [more]
DHSO_SCHPO1.754e-3651.09Putative sorbitol dehydrogenase OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionC31007A12EF AbioticL1 Citrus clementina cDNA clone C31007A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868965 ID=FC868965; Name=FC868965; organism=Citrus clementina; type=EST; length=652bp
GGCAGCCGAATAAATCATATCTCATATCCAGAATCAGAATAAATGGTAGC
TTAAAATGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTTTTTG
AAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGAAAAG
AAGGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAACAC
CCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGATGTTT
TAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATTATCTC
AAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTATGGTGATTGG
GCACGAGTGTGCTGGGGTCATATAGAAGGTGGGAAGCGAGGTGAAGACTT
TGGTGCCCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGCTGCTGGCGA
TGCGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGATGAAATT
TTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGGTGCATC
CTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGCCAGCAGGG
GCTATGTGTGAGCCCTTGAGTGTTGGTCTTCATGACTGCCGCCGTGCCGA
TA
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