FC868970

Overview
NameFC868970
Unique NameFC868970
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7625 contig Ccv1_Contig7625:379..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868970 vs. ExPASy Swiss-Prot
Match: PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 71/170 (41.76%), Postives = 88/170 (51.76%), Query Frame = 2
Query:  158 MQNLPKGLTVSSKPT----DSSSLAAGTAIAGAIFSTLSSCDXXXXXXXXXXXXXG----DNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRSTKGVIIXXXXXXXXXXXXMSMPPHXXXXXXXXXXXXXXXXDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRS 643
            +QN  K     S PT    + S     TA+AGA+FS+LS  +                  DNRG            WVL+NILQPA+NQ+N+MR +KG+++            +  PP                 DSRGQLLLIVVTPA+LWVLYNILQPALNQIN+MRS
Sbjct:   21 LQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGIVVGLGIGGGLAASGLLTPP---PEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQPALNQINKMRS 187          
BLAST of FC868970 vs. ExPASy Swiss-Prot
Match: PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.814e-21
Identity = 66/163 (40.49%), Postives = 80/163 (49.08%), Query Frame = 2
Query:  170 PKGLTVSSKPTDSSSLAAGTAIAGAIFSTLSSCDXXXXXXXXXXXXX----GDNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRSTKGVIIXXXXXXXXXXXXMSMPPHXXXXXXXXXXXXXXXXDSRGQLLLIVVTPAILWVLYNILQPALNQINRMRSE 646
            P GL+ S  P   S +    AIAGA+F+TL S D                  DNRG            WVLFNILQPALNQIN+MR+ K   I            + +                   D+RG LLL+VV PAI WVL+NILQPALNQ+N+MRS+
Sbjct:   40 PLGLSNSKLPMGLSPIITAPAIAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLAT---PEAQAASEEIARGSDNRGTLLLLVVLPAIGWVLFNILQPALNQLNKMRSQ 199          
The following BLAST results are available for this feature:
BLAST of FC868970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSBY_ARATH4.613e-2541.76Photosystem II core complex proteins psbY, chlorop... [more]
PSBY_SPIOL1.814e-2140.49Photosystem II core complex proteins psbY, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionC31007B05EF AbioticL1 Citrus clementina cDNA clone C31007B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868970 ID=FC868970; Name=FC868970; organism=Citrus clementina; type=EST; length=700bp
GATCGAACACTAGGCCTTAACCTAGAATCATCAATCATCAACATCAATGG
CAGCAGCAATGGCTACAACGGCTGTGCTCAATGCCAAGTGCTTCAGCATC
AGCTCCCCGAAAAGCAGCATCAAGCCTGGAACCACAAAACCCACTTCCCC
GCTCTCCATGCAAAACCTCCCAAAAGGCCTCACGGTCTCATCAAAACCAA
CCGATTCATCATCACTAGCAGCCGGCACCGCCATTGCCGGAGCAATCTTC
TCAACTCTGAGCTCATGCGATGCTGCTTTTGCCGCACAACAAATAGCAGA
AATAGCGGAAGGTGATAACCGAGGGTTAGCACTATTGCTCCCAATCATCC
CGGCCATAGCCTGGGTGCTGTTCAACATTCTGCAGCCAGCACTCAACCAA
ATCAACCGCATGCGCAGCACCAAGGGTGTGATCATCGGGCTCGGGCTTGG
TGGGTTGGCCGCAACAGGGCTGATGTCCATGCCGCCCCATGCATCGGCTG
CGGCCAGTGAAGTTGCCACGATTGCTGAAGCCGCTAGTGACAGCAGGGGT
CAGCTTCTGCTTATTGTTGTTACTCCTGCTATTCTCTGGGTGCTTTACAA
CATTTTGCAGCCGGCTCTGAACCAAATCAACAGGATGAGGTCCGAGTGAG
AGATTAATTCTGTTGGAATAGGTGTAGTACAACGAAATTTTTCTGTAATT
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