FC868982

Overview
NameFC868982
Unique NameFC868982
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868982_ssr88 microsatellite FC868982_ssr88:88..105. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9435 contig Ccv1_Contig9435:1..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868982 vs. ExPASy Swiss-Prot
Match: 6PGL4_ORYSJ (Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0529100 PE=2 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 3.650e-74
Identity = 129/166 (77.71%), Postives = 149/166 (89.76%), Query Frame = 3
Query:  141 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLRRMK 638
            V +FD+EEDLAVSLAKYTA+LSAK   E+G+FTVVLSGGSLI ++RKL EPPY+DS++W+KWHVFWVDERVVPKDH+DSNYKLA DGFLSKVPI TG VYAINDALSAEGAA+DYETCLK L K+ ++A S +TGFP+FD+MLLGMGPDGHIASLFPGHPL+   K
Sbjct:   75 VLIFDAEEDLAVSLAKYTAELSAKLAAERGAFTVVLSGGSLIKNIRKLAEPPYLDSVDWSKWHVFWVDERVVPKDHEDSNYKLALDGFLSKVPIPTGQVYAINDALSAEGAADDYETCLKQLVKNGVIAMSQSTGFPRFDVMLLGMGPDGHIASLFPGHPLVNENK 240          
BLAST of FC868982 vs. ExPASy Swiss-Prot
Match: 6PGL4_ORYSI (Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_031067 PE=3 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 3.650e-74
Identity = 129/166 (77.71%), Postives = 149/166 (89.76%), Query Frame = 3
Query:  141 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLRRMK 638
            V +FD+EEDLAVSLAKYTA+LSAK   E+G+FTVVLSGGSLI ++RKL EPPY+DS++W+KWHVFWVDERVVPKDH+DSNYKLA DGFLSKVPI TG VYAINDALSAEGAA+DYETCLK L K+ ++A S +TGFP+FD+MLLGMGPDGHIASLFPGHPL+   K
Sbjct:   75 VLIFDAEEDLAVSLAKYTAELSAKLAAERGAFTVVLSGGSLIKNIRKLAEPPYLDSVDWSKWHVFWVDERVVPKDHEDSNYKLALDGFLSKVPIPTGQVYAINDALSAEGAADDYETCLKQLVKNGVIAMSQSTGFPRFDVMLLGMGPDGHIASLFPGHPLVNENK 240          
BLAST of FC868982 vs. ExPASy Swiss-Prot
Match: 6PGL5_ARATH (Probable 6-phosphogluconolactonase 5, chloroplastic OS=Arabidopsis thaliana GN=EMB2024 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.298e-71
Identity = 127/166 (76.51%), Postives = 144/166 (86.75%), Query Frame = 3
Query:  141 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLRRMK 638
            V+++D EE+L + LAK+TADLS KF KE+G+FTVV+SGGSLI SLRKLVE PYVDSI+WA+WH FWVDERVVPK+HDDSNYKLAYD FLSKVPI  GNVYAIN+ALSAE AA+DYETCLKHL  +NIL  S +TGFPKFDLMLLGMGPDGH+ASLFPGH L    K
Sbjct:   83 VEIYDLEENLVIDLAKFTADLSDKFCKERGAFTVVVSGGSLIKSLRKLVESPYVDSIDWARWHFFWVDERVVPKNHDDSNYKLAYDSFLSKVPIPPGNVYAINEALSAEAAADDYETCLKHLVNTNILRVSESTGFPKFDLMLLGMGPDGHVASLFPGHGLCNESK 248          
BLAST of FC868982 vs. ExPASy Swiss-Prot
Match: 6PGL3_ORYSJ (Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0547100 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.220e-63
Identity = 113/160 (70.62%), Postives = 132/160 (82.50%), Query Frame = 3
Query:  147 VFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLL 626
            +FD+EE LA SLAKYTA LS +   E+G+FTV LSGGSLI +LRKL E PY++++EW+KWHVFWVDERVVPKDH DSNYKLA DG LSKVPI    +YAIND LSAEGAA++YETCLK L    ++A S  TGFPK DLMLLGMGPDGH+ASLFPGHP++
Sbjct:   80 IFDAEEYLAESLAKYTARLSGEAVAERGAFTVALSGGSLIKALRKLTESPYLEAVEWSKWHVFWVDERVVPKDHADSNYKLAMDGLLSKVPIPASQIYAINDTLSAEGAADEYETCLKQLVNDGVVAISEVTGFPKLDLMLLGMGPDGHVASLFPGHPVV 239          
BLAST of FC868982 vs. ExPASy Swiss-Prot
Match: 6PGL3_ORYSI (Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_30141 PE=3 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 2.220e-63
Identity = 113/160 (70.62%), Postives = 132/160 (82.50%), Query Frame = 3
Query:  147 VFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLL 626
            +FD+EE LA SLAKYTA LS +   E+G+FTV LSGGSLI +LRKL E PY++++EW+KWHVFWVDERVVPKDH DSNYKLA DG LSKVPI    +YAIND LSAEGAA++YETCLK L    ++A S  TGFPK DLMLLGMGPDGH+ASLFPGHP++
Sbjct:   80 IFDAEEYLAESLAKYTARLSGEAVAERGAFTVALSGGSLIKALRKLTESPYLEAVEWSKWHVFWVDERVVPKDHADSNYKLAMDGLLSKVPIPASQIYAINDTLSAEGAADEYETCLKQLVNDGVVAISEVTGFPKLDLMLLGMGPDGHVASLFPGHPVV 239          
BLAST of FC868982 vs. ExPASy Swiss-Prot
Match: 6PGL2_ARATH (Probable 6-phosphogluconolactonase 2 OS=Arabidopsis thaliana GN=At3g49360 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.067e-57
Identity = 108/162 (66.67%), Postives = 127/162 (78.40%), Query Frame = 3
Query:  144 QVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEG----AAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGH 617
            +VF +  ++AV LAKYTADLS+KF KE+G FTVVLSGG LI  L KL+E PY+DSIEW+KWH+FWVDERV   DH DSNYKLAYDGFLSKVP+   N+YAI++ L AEG    AAE YE CLK     NI+ T  ++GFP+FDL LLGMGPDGH+ASLFPGH
Sbjct:    7 RVFKTNNEMAVELAKYTADLSSKFCKERGVFTVVLSGGDLIAWLWKLLEAPYIDSIEWSKWHIFWVDERVCAWDHADSNYKLAYDGFLSKVPVPAENIYAIDNGLGAEGNAELAAERYEECLKQKVNQNIIRTYKSSGFPQFDLQLLGMGPDGHMASLFPGH 168          
BLAST of FC868982 vs. ExPASy Swiss-Prot
Match: 6PGL3_ARATH (Probable 6-phosphogluconolactonase 3 OS=Arabidopsis thaliana GN=At5g24420 PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.104e-54
Identity = 105/162 (64.81%), Postives = 126/162 (77.78%), Query Frame = 3
Query:  147 VFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAED----YETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHP 620
            VF ++ +L+ ++A+YTA+LSAKF KEKG FTVVLSGG LID L KLV+PPY+DSIEW KWHVFWVDERV   +  DSNYKLA +GFLSKVPI   N+YAI+  L+A+G AE     YE CLK+L K  I+  S  TG+P+FDL LLGMGPDGH+ASLFP HP
Sbjct:    8 VFPTKNELSEAMAEYTANLSAKFIKEKGLFTVVLSGGDLIDWLCKLVQPPYIDSIEWPKWHVFWVDERVCAWEDPDSNYKLAMEGFLSKVPIPDKNIYAIDKHLAADGNAEHCATLYEECLKNLVKEKIIPISKKTGYPEFDLQLLGMGPDGHMASLFPNHP 169          
BLAST of FC868982 vs. ExPASy Swiss-Prot
Match: 6PGL4_ARATH (Probable 6-phosphogluconolactonase 4 OS=Arabidopsis thaliana GN=At5g24410 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.480e-54
Identity = 101/161 (62.73%), Postives = 126/161 (78.26%), Query Frame = 3
Query:  147 VFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAED----YETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGH 617
            VF ++++L+ ++A YTA+LSAKF KE+G FTVVLSGG LI  L +L+EP Y +SIEW+KWH+FWVDERVVP DH+DSNYKLA+DGFLSKVPI   N+Y I+   +A G A+     YE CLK L   NI+ T  ++GFP+FDL LLGMGPDGH+ASLFPGH
Sbjct:   14 VFPTKKELSEAMATYTANLSAKFCKERGYFTVVLSGGDLISWLSELLEPKYQESIEWSKWHIFWVDERVVPLDHEDSNYKLAFDGFLSKVPIPIANIYPIDKDCAALGDAKSAALLYEECLKRLVNRNIIRTYKSSGFPQFDLQLLGMGPDGHMASLFPGH 174          
BLAST of FC868982 vs. ExPASy Swiss-Prot
Match: 6PGL1_ARATH (Probable 6-phosphogluconolactonase 1 OS=Arabidopsis thaliana GN=At1g13700 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.726e-45
Identity = 85/162 (52.47%), Postives = 117/162 (72.22%), Query Frame = 3
Query:  141 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLL 626
            ++V ++ E+L++ L  Y A++S    KE G+F +VLSGGSLI  + KL+EPPY   ++WAKW+VFW DERVV K+HDDSNYKLA D  LSKV +   ++ +IND +SAE AA +YE  ++ + +S  +A S  +  P+FDL+LLGMG DGH+ASLFP HP L
Sbjct:   13 IRVHENLEELSIDLVDYIAEISEASIKEHGAFCIVLSGGSLISFMGKLIEPPYDKIVDWAKWYVFWADERVVAKNHDDSNYKLAKDNLLSKVNVFPRHICSINDTVSAEEAATEYEFAIRQMVRSRTVAASDNSDSPRFDLILLGMGSDGHVASLFPNHPAL 174          
BLAST of FC868982 vs. ExPASy Swiss-Prot
Match: 6PGL2_ORYSJ (Probable 6-phosphogluconolactonase 2 OS=Oryza sativa subsp. japonica GN=Os07g0604000 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.352e-43
Identity = 78/162 (48.15%), Postives = 112/162 (69.14%), Query Frame = 3
Query:  141 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLL 626
            +++F+S ++++  LA+Y + +S    KE+G F + LSGG L+  L KL E PY  +++W+KW++FW DER V K+H +SNY++  +GFLSKVPI  G+VY+IND  + E AA DYE  ++ L K   +  S +   PKFDL+LL MG DGH+ASLFP HP L
Sbjct:   17 IRIFESSDEMSTDLAEYISQVSEISVKERGYFAIALSGGPLVSFLGKLCEAPYNKTLDWSKWYIFWSDERAVAKNHAESNYRITKEGFLSKVPILNGHVYSINDNATVEDAATDYEFVIRQLVKVRTIGVSESNDCPKFDLILLSMGSDGHVASLFPNHPSL 178          
The following BLAST results are available for this feature:
BLAST of FC868982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
6PGL4_ORYSJ3.650e-7477.71Probable 6-phosphogluconolactonase 4, chloroplasti... [more]
6PGL4_ORYSI3.650e-7477.71Probable 6-phosphogluconolactonase 4, chloroplasti... [more]
6PGL5_ARATH1.298e-7176.51Probable 6-phosphogluconolactonase 5, chloroplasti... [more]
6PGL3_ORYSJ2.220e-6370.63Probable 6-phosphogluconolactonase 3, chloroplasti... [more]
6PGL3_ORYSI2.220e-6370.63Probable 6-phosphogluconolactonase 3, chloroplasti... [more]
6PGL2_ARATH1.067e-5766.67Probable 6-phosphogluconolactonase 2 OS=Arabidopsi... [more]
6PGL3_ARATH1.104e-5464.81Probable 6-phosphogluconolactonase 3 OS=Arabidopsi... [more]
6PGL4_ARATH5.480e-5462.73Probable 6-phosphogluconolactonase 4 OS=Arabidopsi... [more]
6PGL1_ARATH2.726e-4552.47Probable 6-phosphogluconolactonase 1 OS=Arabidopsi... [more]
6PGL2_ORYSJ4.352e-4348.15Probable 6-phosphogluconolactonase 2 OS=Oryza sati... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31007C05EF AbioticL1 Citrus clementina cDNA clone C31007C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868982 ID=FC868982; Name=FC868982; organism=Citrus clementina; type=EST; length=658bp
AGTTACTCAGAAGACCAAACTCTCTCCTCCAATTTCGAAACATTTCCCTT
AATCGGAACAAATCATCGGACTGCGTGAGAATCAAGGCATCATCATCATC
ATCATCAATGGCTGCCGAGAATAAGAACAAGAACAAGAACGTACAGGTTT
TTGACTCAGAGGAAGATCTGGCTGTGTCTTTGGCCAAATACACCGCCGAC
CTATCTGCCAAGTTCGGTAAAGAGAAGGGCTCCTTCACTGTCGTCTTATC
CGGTGGTTCTCTCATCGACTCCCTCAGGAAATTAGTGGAACCCCCGTATG
TAGATTCAATTGAATGGGCGAAATGGCATGTGTTTTGGGTTGATGAAAGA
GTTGTTCCCAAGGATCATGATGATAGCAATTATAAGCTTGCTTATGATGG
TTTCCTTTCTAAGGTACCAATTACCACTGGCAATGTCTATGCCATCAATG
ATGCATTATCTGCTGAAGGTGCAGCTGAAGATTATGAGACTTGTCTCAAG
CATTTGACAAAGAGCAATATATTAGCTACATCTGCTGCTACTGGTTTTCC
AAAGTTTGATCTCATGCTTCTGGGTATGGGTCCAGATGGACATATAGCTT
CTCTGTTTCCAGGGCATCCTCTTCTCAGGAGAATGAAAATGGGTTACTTT
CATTAAGA
back to top