FC869043

Overview
NameFC869043
Unique NameFC869043
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC869043 vs. ExPASy Swiss-Prot
Match: Y1342_ARATH (PHD finger protein At1g33420 OS=Arabidopsis thaliana GN=At1g33420 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.110e-46
Identity = 105/228 (46.05%), Postives = 144/228 (63.16%), Query Frame = 2 
Query:    2 RVDEASFRVLRAVSG---SNWVSWRTLRGAVCKVAQPELLDHCLKELGGKLAADGM-VVVARCNPDSGVFEYRLEAANESFNGVTSCNDSPVVKHPSQEILLRDLKLFFESLLHPQTMLNYGPEAIRDLAISSATKLIDCKQFMKDYKPEKTSSINDSYTIRLSCQLELMDPSEDNVPDPPSEIIVLPRNATVSDLKTEASSAFQDVYLVFRRFQADELLGYSGVDDS 673
            RV +   ++L+A SG   +NWV+   L+ ++CK A P+L+D+CLK  GG L  DG  VV +RCNP S  FEYRLE+ N          ++  V+H  Q     DL+  +E+LLHPQTM  +   A R+  I +ATK++DCK F+KDY     SS  +   I L C +EL D  +++ P PP E +VLP NATVSDLK EA+ AFQ+VY +F+RF+ +ELLGY  +DDS
Sbjct:  350 RVQQTMVKILKA-SGRPQANWVTRWALKRSICKSASPQLIDYCLKHFGGVLVDDGSRVVSSRCNPGSNDFEYRLESVNNVHRLSNQDVNNASVEHVKQ-----DLRYLYETLLHPQTMAEFRSRATREKMIDAATKILDCKHFIKDY----LSSTVNPVAINLWCCVELSDELKES-PAPPPERLVLPLNATVSDLKIEAAKAFQEVYAMFKRFEVEELLGYGSIDDS 566
The following BLAST results are available for this feature:
BLAST of FC869043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1342_ARATH2.110e-4646.05PHD finger protein At1g33420 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC31007H07EF AbioticL1 Citrus clementina cDNA clone C31007H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869043 ID=FC869043; Name=FC869043; organism=Citrus clementina; type=EST; length=697bp
ACGTGTGGATGAAGCCTCCTTTAGAGTACTTCGGGCTGTGTCTGGATCCA
ATTGGGTTAGTTGGCGAACTCTTAGGGGTGCAGTATGCAAAGTGGCTCAA
CCAGAGCTACTTGATCATTGTCTCAAGGAGCTTGGAGGAAAATTAGCAGC
TGATGGGATGGTGGTTGTAGCCAGGTGCAACCCGGATTCGGGTGTATTTG
AGTACAGACTTGAGGCAGCTAATGAATCCTTCAATGGTGTTACATCTTGC
AATGATTCTCCTGTTGTTAAGCATCCATCTCAAGAAATTCTCCTGCGAGA
CCTGAAACTCTTTTTTGAGAGTCTGTTGCATCCACAAACCATGCTAAACT
ATGGACCTGAGGCAATAAGGGATCTTGCTATCAGTTCAGCTACAAAGCTC
ATTGACTGCAAGCAGTTCATGAAAGATTACAAGCCTGAAAAGACTTCCTC
AATTAATGATTCATACACAATCCGCCTCTCATGTCAGTTAGAACTCATGG
ATCCATCCGAAGATAATGTCCCTGATCCACCTTCCGAGATAATTGTCTTG
CCTAGAAATGCTACCGTTTCTGACCTCAAAACTGAAGCATCAAGTGCTTT
CCAAGATGTATATTTAGTATTTAGAAGATTTCAGGCCGATGAGCTTCTTG
GCTATAGTGGTGTAGATGATTCCACCCAGNTAAACTCTTACTAGGGA
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