FC869055

Overview
NameFC869055
Unique NameFC869055
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8357 contig Ccv1_Contig8357:406..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 3.318e-66
Identity = 114/153 (74.51%), Postives = 129/153 (84.31%), Query Frame = 3
Query:   93 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPPWYTAGELEYFTDTTTLFIVEMIFIRWAEGRRWADII 551
            QK+ S+ GATKASF            A  G+RSV+VSA AADP+RPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE+L+WN Q+E+VH RWAMLGAAGIFIPE LTK+G+LNTP WYTAGE EYFTDTTTLF++E++ I WAEGRRWADII
Sbjct:   21 QKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADII 173          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.305e-62
Identity = 110/153 (71.90%), Postives = 122/153 (79.74%), Query Frame = 3
Query:   93 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPPWYTAGELEYFTDTTTLFIVEMIFIRWAEGRRWADII 551
            +++ S+ G TKASF             T   RS +    AADP+RPLWFPGSTPP WLDGSLPGDFGFDPLGL SDPE+LRWN Q+E+VHCRWAMLGAAGIFIPELLTK+GILNTP WYTAGE EYFTDTTTLFIVE++ I WAEGRRWADII
Sbjct:   21 RRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADII 173          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.836e-33
Identity = 61/105 (58.10%), Postives = 76/105 (72.38%), Query Frame = 3
Query:  234 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPPWYTAGELEYFTDTTTLFIVEMIFIRWAEGRRWADI 548
            W PG   P +L GSLPGD GFDPLGL  DPE LRW VQ+E+V+ RWAMLG AG+ +PE+ T +GI+N P WY AG+ EYF  ++TLF++E I   + E RRW DI
Sbjct:   56 WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDI 160          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.836e-33
Identity = 61/120 (50.83%), Postives = 82/120 (68.33%), Query Frame = 3
Query:  189 SVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPPWYTAGELEYFTDTTTLFIVEMIFIRWAEGRRWADI 548
            S   S+   +  +  W PG   P++L GSL GD GFDPLGL  DPE L+W VQ+E+V+ RWAMLG AG+ +PE+ TK+GI+N P WY AG+ +YF  ++TLF++E I   + E RRW DI
Sbjct:   42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDI 161          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.330e-25
Identity = 60/122 (49.18%), Postives = 75/122 (61.48%), Query Frame = 3
Query:  186 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPPWY-TAGELEYFTDTTTLFIVEMIFIRWAEGRRWADI 548
            R V+V A  +      W PG   P +LDGSL GD GFDPL L  DPE LRW VQ+++V+ RWAMLG AG+ IPE+LTK G++N P W    G+  YF  ++T   V M    + E RRW DI
Sbjct:   26 RDVAVQAKGS------WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHM-SSTYVEIRRWQDI 140          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.556e-22
Identity = 59/156 (37.82%), Postives = 82/156 (52.56%), Query Frame = 3
Query:  108 VAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGST------PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPPWYTA----GELEYFTDTTTLFIVEMIFIRWAEGRRWAD 545
            ++G  K+S              +  +R + V AAAA P +  W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAML   GIF+ +  T +      PW+ A    G +  F+   TL   +++ + W E +RW D
Sbjct:   19 LSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKS-WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFS-FGTLLGTQLLLMGWVESKRWVD 166          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.595e-20
Identity = 60/142 (42.25%), Postives = 78/142 (54.93%), Query Frame = 3
Query:  183 TRSVSVSAAAADP------NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL---NTPPWY------TAGELEYFTDTTTLFIVEMIFIRWAEGRRWAD 545
            +R   V AAA  P      +RPLWF       +LDGSLPGD+GFDPLGL SDPE        RW    E+++ R+AMLGA G   PE L K+G++       W+       AG   Y+ D  TLF++EM  + +AE RR+ D
Sbjct:   35 SRKGLVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQD 175          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.046e-19
Identity = 51/126 (40.48%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  198 VSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPPWYTA----GELEYFTDTTTLFIVEMIFIRWAEGRRWAD 545
            V+AAA  P +  W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAM    GIF+ +  + +      PW+ A    G +  F+   +L   +++ + W E +RW D
Sbjct:   44 VAAAAVAPKKS-WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVD 161          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.046e-19
Identity = 56/135 (41.48%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  186 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL---NTPPWY------TAGELEYFTDTTTLFIVEMIFIRWAEGRRWAD 545
            R+ S        NR LWF       +LDG LPGDFGFDPLGL SDPE        +W    E+++ R+AMLGAAG   PE+L K G++       W+       AG   Y+ D  TLF++EM  + +AE RR+ D
Sbjct:   40 RAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQD 173          
BLAST of FC869055 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.330e-19
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 3
Query:  177 AGTRSVSVSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPPWYTA----GELEYFTDTTTLFIVEMIFIRWAEGRRWAD 545
            A  +  +V AAAA  +   W P          PEWLDGSLPGD+GFDPLGLG DP  L+W  ++E++H RWAM    GIF+ +  + +      PW+ A    G +  F+   TL   ++I + W E +RW D
Sbjct:   39 ATPKRFTVLAAAAKKS---WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGTLLGTQLILMGWVESKRWVD 161          
The following BLAST results are available for this feature:
BLAST of FC869055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB12_PETHY3.318e-6674.51Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC1.305e-6271.90Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA4.836e-3358.10Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH4.836e-3350.83Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU6.330e-2549.18Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB4_SPIOL8.556e-2237.82Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB23_PEA3.595e-2042.25Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB4B_SOLLC1.046e-1940.48Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB13_SOLLC1.046e-1941.48Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB4A_SOLLC2.330e-1939.85Chlorophyll a-b binding protein CP24 10A, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC31008A07EF AbioticL1 Citrus clementina cDNA clone C31008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869055 ID=FC869055; Name=FC869055; organism=Citrus clementina; type=EST; length=553bp
GTCATAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAATTTGCCCTCCGTT
TGTGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAG
TAGATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGC
TGAAATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTG
AGTGCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCAC
TCCTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATC
CTCTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCA
GAAATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCAT
TCCGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCACCCTGGTACA
CAGCTGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTGTT
GAGATGATATTCATACGCTGGGCAGAGGGAAGACGGTGGGCCGACATTAT
AAA
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