FC869085

Overview
NameFC869085
Unique NameFC869085
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length569
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869085_ssr501 microsatellite FC869085_ssr501:501..512. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14845 contig Ccv1_Contig14845:132..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.374e-41
Identity = 89/114 (78.07%), Postives = 99/114 (86.84%), Query Frame = 3
Query:  174 PSRFVRNVAVSSEFD-QEEDLLSDEDGS------NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            PSRFVRNVAVSS+F+ +E+D+ +D D S      +FSPDLKLFVGNL F+VDSAQLA LFE+AGNVEMVEVIYDKVTGRSRGFGFVTMS+  EVEAAAQQFNGYE EGRPLRVN
Sbjct:   60 PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173          

HSP 2 Score: 78.1814 bits (191), Expect = 3.190e-14
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  249 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            GS      +L+VGNL + VD   L  LF   G V    VIYD+ +GRS+GFGFVT+SS +EV+ A    NG +L+GR +RV+
Sbjct:  250 GSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVS 331          
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.221e-41
Identity = 87/112 (77.68%), Postives = 96/112 (85.71%), Query Frame = 3
Query:  168 SSPSRFVRNVAVSSEFDQEEDLLSD---EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            S  SRF RNVA++SEF+ EED  +D       +FS DLKLFVGNLPF+VDSAQLA LFE+AGNVEMVEVIYDK+TGRSRGFGFVTMSSV EVEAAAQQFNGYEL+GRPLRVN
Sbjct:   54 SPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN 165          

HSP 2 Score: 72.4034 bits (176), Expect = 1.750e-12
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 3
Query:  249 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            GS      +++VGNL + VD   L  LF   G V    VIYD+ +GRS+GFGFVT  S +EV+ A +  +G +L+GR +RV+
Sbjct:  197 GSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278          
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.403e-38
Identity = 84/110 (76.36%), Postives = 91/110 (82.73%), Query Frame = 3
Query:  177 SRFVRNVAVSSEFDQEEDLLSDEDG----SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            SRFVR V +S +FDQ ED+   +DG     NFSPDLK+FVGNLPFS DSA LA LFE AGNVEMVEVIYDK+TGRSRGFGFVTMSS EEVEAA QQFNGYEL+GR LRVN
Sbjct:   53 SRFVRKVTLS-DFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161          

HSP 2 Score: 77.0258 bits (188), Expect = 7.106e-14
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  249 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            G +F    +++VGNL + VD   L  LF   G V   +V+YD+ +GRSRGFGFVT SS EEV  A +  +G +L GR +RV+
Sbjct:  181 GGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262          
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.605e-36
Identity = 84/116 (72.41%), Postives = 92/116 (79.31%), Query Frame = 3
Query:  165 PSS--PSRFVRNVAVSSEFDQEEDLLSDEDG----SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            PSS   SRFVR V +  +FDQ ED+   ++G     NFSPDLK+FVGNL FS DSA LA LFE AGNVEMVEVIYDK+TGRSRGFGFVTMSS EEVEAA QQFNGYEL+GR LRVN
Sbjct:   47 PSSCFSSRFVRKVTLP-DFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161          

HSP 2 Score: 77.0258 bits (188), Expect = 7.106e-14
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  249 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            G +F    +++VGNL + VD   L  LF   G V   +V+YD+ +GRSRGFGFVT SS EEV  A +  +G +L GR +RV+
Sbjct:  187 GGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268          
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.303e-35
Identity = 78/106 (73.58%), Postives = 86/106 (81.13%), Query Frame = 3
Query:  177 SRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            S F   VA+S  FDQ ED +   +   FS DLKLFVGNLPFSVDSA LAGLFE AGNVEMVEVIYDK+TGRSRGFGFVTMS+ EEVEAA QQFNGYE++GR +RVN
Sbjct:   57 SSFSTRVALSG-FDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 161          

HSP 2 Score: 76.2554 bits (186), Expect = 1.212e-13
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  249 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            G +     +++VGNL + VD   L  LF   GNV   +V+YD+ +GRSRGFGFVT SS +EV  A    NG +L+GR +RV+
Sbjct:  200 GRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVS 281          
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.624e-34
Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 3
Query:  177 SRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            S F   VA+S +FDQ ED +   +   FS DLKLFVGNLPFSVDSA LAGLFE AGNVE+VEVIYDK++GRSRGFGFVTMS+ EEVEAA QQFNGYE++GR +RVN
Sbjct:   58 SSFSTRVALS-DFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 162          

HSP 2 Score: 77.0258 bits (188), Expect = 7.106e-14
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  249 GSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            G +     +++VGNL + VD   L  LF   GNV   +V+YD+ +GRSRGFGFVT SS +EV  A    NG +L+GR +RV+
Sbjct:  201 GRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVS 282          
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.428e-22
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 3
Query:  243 EDGSNFSP---DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            E G  FS    + KLFVGNLP+ VDS +LAG+F+ AG VE+ EVIY++ T RSRGFGFVTMS+VEE E A +  NGY+++GR L VN
Sbjct:   43 EGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN 129          

HSP 2 Score: 81.6481 bits (200), Expect = 2.885e-15
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  255 NFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            +F P  +++VGNLP+ VD+++L  LF   G V    V+ D+ TGRSRGFGFVTMSS  EV  A    +G  L+GR +RVN
Sbjct:  144 DFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVN 223          
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.694e-21
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 3
Query:  183 FVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            FV  V  + E D+ E    +E+      D KLFVGNLP+ VDS  LA LFE AG VE+ EVIY++ T +SRGFGFVTMS+VEE E A + +N Y++ GR L VN
Sbjct:  107 FVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVN 210          

HSP 2 Score: 80.1073 bits (196), Expect = 8.394e-15
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 3
Query:  258 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            F    +++VGN+P+ +D A+L  LF   G V    V+YD+ TGRSRGFGFVTM+S  E+  A    +G  L+GR +RVN
Sbjct:  226 FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVN 304          
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.666e-20
Identity = 57/122 (46.72%), Postives = 73/122 (59.84%), Query Frame = 3
Query:  177 SRFVRNVAVSSEFDQEEDLLSDEDGSNF----------------SPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            ++F   V+V SE D    L   E G +F                S D KLFVGNLP+ +DS  LA LF+ AG VE+ EVIY++ T RSRGFGFVTMS+VEE + A + ++ Y+L GR L VN
Sbjct:   50 TQFPTFVSVLSEDDNTLVLDDQEQGGDFPSFVGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVN 171          

HSP 2 Score: 79.7221 bits (195), Expect = 1.096e-14
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 3
Query:  258 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            F P  +++VGN+P+ +D A+L  +F   G V    V++D+ +GRSRGFGFVTMSS  E+  A    +G  L+GR +RVN
Sbjct:  187 FQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVN 265          
BLAST of FC869085 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.478e-19
Identity = 53/97 (54.64%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  207 SEFDQEEDLLSDE-DGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            SE D  E  +S+  +    S + KLFVGNL + V+S  LA LFE AG VE+ EVIY++ T +SRGFGFVTMSSV+E E A ++FN Y+L GR L VN
Sbjct:  128 SEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN 224          

HSP 2 Score: 85.5001 bits (210), Expect = 1.998e-16
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  258 FSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 494
            + P  +++VGNLP+ VD+ +L  LF   G V    V+YD+ TGRSRGFGFVTMS V+E+  A    +G  LEGR +RVN
Sbjct:  240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318          
The following BLAST results are available for this feature:
BLAST of FC869085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ROC2_ARATH1.374e-4178.0729 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_ARATH5.221e-4177.68Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC1_NICSY5.403e-3876.3629 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL6.605e-3672.4130 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICSY7.303e-3573.5829 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_NICPL3.624e-3471.7031 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL5.428e-2259.7728 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC4_NICSY2.694e-2152.8831 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_NICSY8.666e-2046.7228 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH1.478e-1954.6431 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC31008D04EF AbioticL1 Citrus clementina cDNA clone C31008D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869085 ID=FC869085; Name=FC869085; organism=Citrus clementina; type=EST; length=569bp
CGTCAGCTTCTTCGCTGGTGCTCCCATCTCTCAGTCCCAAAACCCTAGCC
TTCTACAACTCAAAACCCACTTCATTTTCTCTCTTATCTTCCTCCTCTTC
TCACAAACTTCTAGCGAAGCCCATCTCGATATCCTCTTCTTTCATCCATT
CTTTTCAACCCTTGCCCTCTTCCCCCTCTCGTTTCGTCAGAAACGTAGCC
GTTTCGTCCGAGTTTGACCAGGAAGAGGACCTTTTGAGCGATGAAGACGG
TTCGAATTTCTCCCCCGACTTGAAACTTTTTGTGGGTAACCTTCCTTTTA
GCGTTGACAGTGCTCAGCTTGCTGGCTTGTTTGAAACCGCTGGAAATGTT
GAGATGGTTGAGGTAATATATGACAAGGTCACTGGGAGAAGCAGAGGATT
TGGTTTTGTGACCATGTCAAGTGTTGAGGAAGTTGAAGCAGCTGCTCAGC
AGTTCAATGGCTATGAACTCGAGGGCCGACCCCTGAGGGTGAACTCTGGA
CCTCCTCCTCCTAGGAGGGAAGAATTCTCTCCCAGAGGGCCCAGAGGAAG
TGGTGCTGGTGCGCCTTCT
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