FC869092

Overview
NameFC869092
Unique NameFC869092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13267 contig Ccv1_Contig13267:238..972. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869092 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.196e-34
Identity = 43/118 (36.44%), Postives = 68/118 (57.63%), Query Frame = 2
Query:    5 GHVGQIELASFALVQSIFLRFVNGILLGMSSATETLCGQAFGAGHYHMMGIYLQRSWLVDCVTATIMLPVFIFGTPIMNLLGQQKDIAETGGVISLWLIPFVYNFVFSLTIQMFLQAQ 358
            GH+G ++LA  ++          GI+LGM+SA +T+CGQA+GA  Y  MGI  QR+ ++    A  +  ++ +  PI+  +GQ   IA  G + +  +IP +Y F  +  +Q FLQAQ
Sbjct:   81 GHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQ 198          

HSP 2 Score: 78.9518 bits (193), Expect = 3.196e-34
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 3
Query:  375 IGWLSTASFLLHVLMSWIFVSELDLGIAGAMGSLNISAWLNIIGLFVYIFCGW-CPDTWKGFTNAAFTDILPVIKLSISSGVMICLELWY 641
            + ++S   FLLH L++W+  + LD G+ GA   L+ S WL +    +YI     C +TW GF+  AF  I P  KL+++S VM+CLE+WY
Sbjct:  204 LAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWY 293          
BLAST of FC869092 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 4.655e-12
Identity = 26/82 (31.71%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  402 LLHVLMSWIFVSELDLGIAGAMGSLNISAWLNIIGLFVYIFCGW---CPDTWKGFTNAAFTDILPVIKLSISSGVMICLELW 638
            + + L ++I +  L LG+ G+  +  +S ++ +I LF+YI   W     DTW G++ A F +    I+L+++S +M+C+E W
Sbjct:  210 IFNALFNYILLYVLGLGVMGSACANTVSQFIQMILLFLYIV--WRRLYADTWGGWSQACFEEWGAFIRLAVASMLMLCIEWW 289          

HSP 2 Score: 41.5874 bits (96), Expect = 4.655e-12
Identity = 29/118 (24.58%), Postives = 55/118 (46.61%), Query Frame = 2
Query:    5 GHVGQIELASFALVQSIFLRFVNGILLGMSSATETLCGQAFGAGHYHMMGIYLQRSWLVDCVTATIMLPVFIFGTPIMNLLGQQKDIAETGGVISLWLIPFVYNFVFSLTIQMFLQAQ 358
            GH+G++EL + +L  +I       +  G++ A +TL  Q FG  +  ++GI LQR  L+  +       + I    I+ L  Q  ++++   +  L  +P +        +  +LQ Q
Sbjct:   78 GHLGKVELDAVSLAITIINITGVAVGTGLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQ 195          
BLAST of FC869092 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 1.717e-11
Identity = 35/119 (29.41%), Postives = 61/119 (51.26%), Query Frame = 2
Query:    5 GHVGQIELASFALVQSIFLRFVNGILLGMSSATETLCGQAFGAGHYHMMGIYLQRSWLVDCVTATIMLPVFIFGTPIMNLLGQQKDIAETGGVISLWLIPFV-YNFVFSLTIQMFLQAQ 358
            GH+G++EL +  L  S+       +  G++SA +TL  Q+FG  +   +G+ LQR  L+  +       +F+    ++ LL Q  D+A    V  +  IP +   F+F L  + +LQ+Q
Sbjct:   73 GHLGKVELDAVTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQTR-YLQSQ 190          

HSP 2 Score: 40.4318 bits (93), Expect = 1.717e-11
Identity = 30/116 (25.86%), Postives = 54/116 (46.55%), Query Frame = 3
Query:  393 ASFLLHVLMSWIFVSELDLGIAGAMGSLNISAWLNIIGLFVYIFCGWCP---DTWKGFTNAAFTDILPVIKLSISSGVMICLELWYIPF*SYWLGT*KNAPLPYLLSLFALMSVHF 731
            A+ +++V M+   +  LDLG+ G+  +   S +     LF+Y++  W      TW G+T   F +     +L+I S  M+C+E W     ++  G      L     ++ L SV +
Sbjct:  202 AANVVNVGMNAFLLYALDLGVVGSAWANTTSQFFLSALLFLYVW--WKRIHIHTWGGWTRECFQEWSSYTRLAIPSMFMVCIEWWTFEIGTFLAGLVNVTELGAQAVIYELASVAY 315          
BLAST of FC869092 vs. ExPASy Swiss-Prot
Match: S47A2_PONAB (Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 2.891e-11
Identity = 35/115 (30.43%), Postives = 58/115 (50.43%), Query Frame = 2
Query:    5 GHVGQIELASFALVQSIFLRFVN----GILLGMSSATETLCGQAFGAGHYHMMGIYLQRSWLVDCVTATIMLPVFIFGTPIMNLLGQQKDIAETGGVISLWLIP-----FVYNFV 322
            GH+G++ELAS  L     + FVN     + +G+SSA +TL  Q+FG+ +   +G+ LQR  LV  +       +F+    I+ L  Q  +++       +  IP     F+YN +
Sbjct:   60 GHLGKVELASVTLA----VAFVNVCGVSVGVGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLFRQDPEVSRLTQDYVMIFIPGLPVIFLYNLL 170          

HSP 2 Score: 42.743 bits (99), Expect = 2.891e-11
Identity = 25/84 (29.76%), Postives = 44/84 (52.38%), Query Frame = 3
Query:  420 SWIFVSELDLGIAGAMGSLNISAWLNIIGLFVYIFCGWCP-DTWKGFTNAAFTDILPVIKLSISSGVMICLELWYIPF*SYWLG 668
            ++  VS L+LG+ G+  +  IS +   + L +YI       +TW G+++    D  P   L++ S +MIC+E W     S+ +G
Sbjct:  198 NYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVLKKLHLETWAGWSSQCLQDWGPFFSLAVPSMLMICVEWWAYEIGSFLMG 281          
BLAST of FC869092 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 45.4394 bits (106), Expect = 3.755e-11
Identity = 30/116 (25.86%), Postives = 59/116 (50.86%), Query Frame = 2
Query:    5 GHVGQIELASFALVQSIFLRFVNGILLGMSSATETLCGQAFGAGHYHMMGIYLQRSWLVDCVTATIMLPVFIFGTPIMNLLGQQKDIAE-TGGVISLWLIPFVYNFVFSLTIQMFL 349
            GH+G++EL +  L  ++       +  G+SSA +TL  Q +G+ +   +G+ LQRS LV  +       +F+    I+ L  Q  D++  T   +++++      F++ L ++  L
Sbjct:   64 GHLGKLELDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALVLLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLL 179          

HSP 2 Score: 43.1282 bits (100), Expect = 3.755e-11
Identity = 25/83 (30.12%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  393 ASFLLHVLMSWIFVSELDLGIAGAMGSLNISAWLNIIGLFVYIFCGWCPD-TWKGFTNAAFTDILPVIKLSISSGVMICLELW 638
            A+ L++ L +++F+ +L LG+ G+  +  IS +   + LF+YI        TW G++     D    ++L+I S +M+C+E W
Sbjct:  193 AANLVNALANYLFLHQLHLGVIGSALANLISQYTLALLLFLYILGKKLHQATWGGWSLECLQDWASFLRLAIPSMLMLCMEWW 275          
BLAST of FC869092 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 44.669 bits (104), Expect = 3.756e-11
Identity = 27/85 (31.76%), Postives = 48/85 (56.47%), Query Frame = 3
Query:  393 ASFLLHVLMSWIFVSELDLGIAGAMGSLNISAWLNIIGLFVYIFCGWCP---DTWKGFTNAAFTDILPVIKLSISSGVMICLELW 638
            A+ L++ L +++F+ +L LG+ G+  +  IS +   I LF+YI   W      TW G++     D    ++L+I S +M+C+E W
Sbjct:  192 AANLVNALANYLFLHQLHLGVMGSALANTISQFALAIFLFLYIL--WRKLHHATWGGWSWECLQDWASFLQLAIPSMLMLCIEWW 274          

HSP 2 Score: 43.8986 bits (102), Expect = 3.756e-11
Identity = 33/118 (27.97%), Postives = 60/118 (50.85%), Query Frame = 2
Query:    5 GHVGQIELASFALVQSIFLRFVNGILLG--MSSATETLCGQAFGAGHYHMMGIYLQRSWLVDCVTATIMLPVFIFGTPIMNLLGQQKDIAETGGVISLWLIPFV-YNFVFSLTIQMFL 349
            GH+G++EL +  L  ++    V GI +G  +SSA +TL  Q +G+ +   +G+ LQR  L+  +       +FI    I+ L  Q  D++       +  IP +   F+++L ++  L
Sbjct:   63 GHLGKLELDAVTLAIAVIN--VTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMVFIPALPAAFLYTLQVKYLL 178          
BLAST of FC869092 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 44.2838 bits (103), Expect = 4.875e-11
Identity = 27/85 (31.76%), Postives = 47/85 (55.29%), Query Frame = 3
Query:  393 ASFLLHVLMSWIFVSELDLGIAGAMGSLNISAWLNIIGLFVYIFCGW---CPDTWKGFTNAAFTDILPVIKLSISSGVMICLELW 638
            A+ L++ L +++F+  L LG+ G+  +  IS +   I LF+YI   W      TW G++     D    ++L+I S +M+C+E W
Sbjct:  193 AANLVNALANYVFLYHLHLGVMGSALANTISQFALAIFLFLYIL--WRRLHQATWGGWSWECLQDWASFLRLAIPSMLMLCIEWW 275          

HSP 2 Score: 43.8986 bits (102), Expect = 4.875e-11
Identity = 32/118 (27.12%), Postives = 61/118 (51.69%), Query Frame = 2
Query:    5 GHVGQIELASFALVQSIFLRFVNGILLG--MSSATETLCGQAFGAGHYHMMGIYLQRSWLVDCVTATIMLPVFIFGTPIMNLLGQQKDIAE-TGGVISLWLIPFVYNFVFSLTIQMFL 349
            GH+G++EL +  L  ++    V GI +G  +SSA +TL  Q +G+ +   +G+ LQR  L+  +       +FI    I+ L  Q  D++  T   + +++      F+++L ++  L
Sbjct:   64 GHLGKLELDAVTLAIAVIN--VTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMIFIPALPAAFLYTLQVKYLL 179          
The following BLAST results are available for this feature:
BLAST of FC869092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TT12_ARATH3.196e-3436.44Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
S47A1_XENTR4.655e-1231.71Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A2_MOUSE1.717e-1129.41Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A2_PONAB2.891e-1130.43Multidrug and toxin extrusion protein 2 OS=Pongo a... [more]
S47A1_HUMAN3.755e-1125.86Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]
S47A1_RAT3.756e-1131.76Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]
S47A1_MOUSE4.875e-1131.76Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
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Properties
Property NameValue
Genbank descriptionC31008D11EF AbioticL1 Citrus clementina cDNA clone C31008D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869092 ID=FC869092; Name=FC869092; organism=Citrus clementina; type=EST; length=736bp
TCTTGGACATGTTGGTCAAATTGAACTCGCCTCATTTGCACTCGTTCAAA
GCATCTTTTTGCGCTTTGTTAACGGAATACTGCTGGGAATGTCAAGTGCA
ACAGAGACATTATGTGGACAAGCATTTGGAGCAGGGCATTATCATATGAT
GGGAATTTACTTGCAACGATCGTGGCTAGTTGATTGTGTAACTGCTACAA
TAATGCTCCCCGTCTTCATCTTTGGAACACCGATCATGAATCTGCTTGGC
CAGCAAAAGGATATAGCAGAAACAGGGGGGGTGATTTCTCTGTGGTTGAT
TCCCTTTGTTTATAACTTCGTCTTCTCCTTGACAATCCAAATGTTCTTAC
AAGCACAGCTCAAGAACATGAATTATCGGGTGGCTATCTACTGCTTCTTT
CCTGCTTCACGTGCTTATGTCCTGGATCTTTGTGAGTGAACTTGACTTAG
GTATTGCTGGTGCAATGGGCTCATTAAACATTTCTGCGTGGCTAAATATC
ATTGGATTGTTTGTTTACATCTTCTGTGGTTGGTGCCCTGATACTTGGAA
AGGTTTCACCAACGCTGCCTTTACTGACATTCTTCCTGTAATAAAGCTGT
CGATATCCTCCGGGGTCATGATTTGCTTGGAGCTCTGGTACATTCCATTC
TAGTCTTATTGGCTGGGTACATGAAAAAATGCACCGTTGCCATATCTGCT
TTCTCTATTTGCCCTCATGTCAGTGCATTTCAATTA
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