FC869103

Overview
NameFC869103
Unique NameFC869103
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig17 contig Ccv1_Contig17:113..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869103 vs. ExPASy Swiss-Prot
Match: CRD1_EUPES (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Euphorbia esula GN=CRD1 PE=3 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.263e-88
Identity = 172/214 (80.37%), Postives = 180/214 (84.11%), Query Frame = 2
Query:   29 MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSATSEQXXXXXXQKPSKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSEFNYALDLGFLTKLGNTHFF 670
            MAAEMALVKPI+          P+F  P  T +S S++F TIKMSATS+        KPSKK NK  I ETLLTPRFYTTDFDEMETLFNTEINKKLNQ+EFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLS+FNYALDLGFLTK     FF
Sbjct:    1 MAAEMALVKPIT----------PKFINPMRTFSS-SSKFSTIKMSATSQSNTTTTATKPSKKGNKKEINETLLTPRFYTTDFDEMETLFNTEINKKLNQSEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFF 203          
BLAST of FC869103 vs. ExPASy Swiss-Prot
Match: CRD1_GOSHI (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Gossypium hirsutum GN=CRD1 PE=2 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 1.352e-82
Identity = 165/214 (77.10%), Postives = 175/214 (81.78%), Query Frame = 2
Query:   29 MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSATSEQXXXXXXQKPSKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSEFNYALDLGFLTKLGNTHFF 670
            MA EMALVKPISKFST    + P FS       S   +F T++MS+TS Q       K  KK+ KTAIKETLLTPRFYTTDFDEME LFNTEINK LNQ+EFE+LLQEFKTDYNQTHFVRNKEFKEAADK+ GPLRQIFVEF ERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLS+FN ALDLGFLTK     FF
Sbjct:    1 MATEMALVKPISKFST----SSPIFS------NSRYGKFTTVRMSSTS-QSTTKAAAKGGKKAAKTAIKETLLTPRFYTTDFDEMEALFNTEINKNLNQSEFESLLQEFKTDYNQTHFVRNKEFKEAADKIDGPLRQIFVEFSERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFF 203          
BLAST of FC869103 vs. ExPASy Swiss-Prot
Match: CRD1_ARATH (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Arabidopsis thaliana GN=CRD1 PE=2 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.145e-81
Identity = 163/215 (75.81%), Postives = 174/215 (80.93%), Query Frame = 2
Query:   29 MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCT-IKMSATSEQXXXXXXQKPSKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSEFNYALDLGFLTKLGNTHFF 670
            MAAEMALVKPISKFS+      P+ S P    +    RF T I+MSA+S           SKK  K  I+E+LLTPRFYTTDF+EME LFNTEINK LN+AEFEALLQEFKTDYNQTHFVRNKEFKEAADK+QGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLS+FN ALDLGFLTK     FF
Sbjct:    1 MAAEMALVKPISKFSS------PKLSNPSKFLSG--RRFSTVIRMSASSSPPPPTTATSKSKKGTKKEIQESLLTPRFYTTDFEEMEQLFNTEINKNLNEAEFEALLQEFKTDYNQTHFVRNKEFKEAADKLQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFF 207          
BLAST of FC869103 vs. ExPASy Swiss-Prot
Match: CRD1_HORVU (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Hordeum vulgare GN=CRD1 PE=1 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.360e-73
Identity = 147/214 (68.69%), Postives = 162/214 (75.70%), Query Frame = 2
Query:   32 AAEMALVKPISKFSTIATTTKPRFSY-PKATCTSLSTRFCTIKMSATSEQXXXXXXQKPSKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSEFNYALDLGFLTKLGNTHFF 670
            A E++L+ P      IA  T       P    +S + RF  ++ +A +          P KK  KT + E+LLTPRFYTTDFDEME LFN EINK+LNQ EF+ALLQEFKTDYNQTHF+RN EFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLS+FN ALDLGFLTK     FF
Sbjct:    4 AMELSLLNPAMHHYGIAAKTASHLPVVPARRASSGAVRF-RVRAAAAAPPAPAAKPGSP-KKRGKTEVNESLLTPRFYTTDFDEMEQLFNAEINKQLNQDEFDALLQEFKTDYNQTHFIRNPEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFF 215          
BLAST of FC869103 vs. ExPASy Swiss-Prot
Match: CTH1_CHLRE (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 2, chloroplastic OS=Chlamydomonas reinhardtii GN=CTH1 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.714e-62
Identity = 116/150 (77.33%), Postives = 129/150 (86.00%), Query Frame = 2
Query:  221 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSEFNYALDLGFLTKLGNTHFF 670
            K A  ETLLTPRFYTTDFDEME LF+ E+NK ++  EFEA+L EFK DYNQ HFVRN+ FKEAA+K+QGP R+IF+EFLERSCTAEFSGFLLYKELGRRLK TNPVVAEIF+LMSRDEARHAGFLNK +S+FN ALDLGFLTK     FF
Sbjct:   56 KVASDETLLTPRFYTTDFDEMERLFSLELNKNMDMEEFEAMLNEFKLDYNQRHFVRNETFKEAAEKIQGPTRKIFIEFLERSCTAEFSGFLLYKELGRRLKATNPVVAEIFTLMSRDEARHAGFLNKAMSDFNLALDLGFLTKNRKYTFF 205          
BLAST of FC869103 vs. ExPASy Swiss-Prot
Match: CRD1_CHLRE (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=CRD1 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.403e-55
Identity = 108/170 (63.53%), Postives = 128/170 (75.29%), Query Frame = 2
Query:  140 RFCTIKMSATSEQXXXXXXQKPSKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSEFNYALDLGFLTK 649
            R  T+++ A++         +  +   K A KETLLTPRFYTTDFDEME LF+ EIN  L+  E  A L EF+ DYN+ HFVRN+ FK AADK+ G  R+IF+EFLERSCTAEFSGFLLYKEL RR+K ++P VAE+F LMSRDEARHAGFLNK LS+FN ALDLGFLTK
Sbjct:   29 RRSTVRVQASAAPLNDGLGFETMRDGIKVAAKETLLTPRFYTTDFDEMEQLFSKEINPNLDMEELNACLNEFRNDYNKVHFVRNETFKAAADKVTGETRRIFIEFLERSCTAEFSGFLLYKELARRMKASSPEVAEMFLLMSRDEARHAGFLNKALSDFNLALDLGFLTK 198          
BLAST of FC869103 vs. ExPASy Swiss-Prot
Match: ACSF3_ANASP (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 3 OS=Anabaena sp. (strain PCC 7120) GN=acsF3 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.509e-49
Identity = 98/150 (65.33%), Postives = 119/150 (79.33%), Query Frame = 2
Query:  221 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSEFNYALDLGFLTKLGNTHFF 670
            K   KETLLTPRFYTTDFDEM       ++  +N+ E  A+L+EF+TDYN+ HFVR+ EF+++ D + G  R++FVEFLERSCTAEFSGFLLYKELGRRLK  +PV+AE F+LMSRDEARHAGFLNK +S+FN +LDLGFLTK  N  FF
Sbjct:   18 KVPAKETLLTPRFYTTDFDEM-----ARMDISVNEDELLAILEEFRTDYNRHHFVRDAEFEKSWDHIDGDTRRLFVEFLERSCTAEFSGFLLYKELGRRLKDKSPVLAECFNLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRNYTFF 162          
BLAST of FC869103 vs. ExPASy Swiss-Prot
Match: ACSF_GRATL (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Gracilaria tenuistipitata var. liui GN=acsF PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.971e-49
Identity = 97/156 (62.18%), Postives = 124/156 (79.49%), Query Frame = 2
Query:  206 SKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSEFNYALDLGFLTKLGNTHFFS 673
            S+  ++T +KETLLTPRFYTTDFDEM  L   +I+  ++  EFEALLQEF+ DYN+ HF+R++EF+++ + +    + +FVEFLERSCTAEFSGFLLYKEL R+L K+NPV+AE F LMSRDEARHAGFLNK +S+FN +LDLGFLTK     FF+
Sbjct:    4 SQNLSQTPVKETLLTPRFYTTDFDEMSKL---DISSNID--EFEALLQEFRADYNRQHFIRDQEFEQSWNNLDSGTKALFVEFLERSCTAEFSGFLLYKELSRKLDKSNPVIAECFLLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRKYTFFA 154          
BLAST of FC869103 vs. ExPASy Swiss-Prot
Match: ACSF1_SYNY3 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1 OS=Synechocystis sp. (strain PCC 6803) GN=acsF1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.971e-49
Identity = 97/150 (64.67%), Postives = 117/150 (78.00%), Query Frame = 2
Query:  221 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSEFNYALDLGFLTKLGNTHFF 670
            KT  KET+LTPRFYTTDFDEM      +++   N+ E  A+L+EF+ DYN+ HFVRN+ F ++ D + G  RQ+FVEFLERSCTAEFSGFLLYKELGRRLK  NP++AE F+LMSRDEARHAGFLNK +S+FN +LDLGFLTK     FF
Sbjct:   18 KTPAKETILTPRFYTTDFDEM-----AKMDISPNEDELRAILEEFRVDYNRHHFVRNESFNKSWDHIDGEKRQLFVEFLERSCTAEFSGFLLYKELGRRLKNKNPLLAECFNLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRKYTFF 162          
BLAST of FC869103 vs. ExPASy Swiss-Prot
Match: ACSF_TRIEI (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Trichodesmium erythraeum (strain IMS101) GN=acsF PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.734e-49
Identity = 95/150 (63.33%), Postives = 118/150 (78.67%), Query Frame = 2
Query:  221 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSEFNYALDLGFLTKLGNTHFF 670
            K   KET+LTPRFYTTDFDEM      +++  +N+ E  A+L+EF+ DYN+ HFVRN+EF ++ D + G  R++FVEFLERSCTAEFSGFLLYKELGRRLK  +P++AE F+LMSRDEARHAGFLNK +S+FN +LDLGFLTK     FF
Sbjct:   18 KVPAKETILTPRFYTTDFDEM-----AKMDISVNEDELMAILEEFRADYNRHHFVRNEEFAQSWDHIDGETRRLFVEFLERSCTAEFSGFLLYKELGRRLKNKSPILAECFTLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRKYTFF 162          
The following BLAST results are available for this feature:
BLAST of FC869103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CRD1_EUPES1.263e-8880.37Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_GOSHI1.352e-8277.10Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_ARATH1.145e-8175.81Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_HORVU4.360e-7368.69Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CTH1_CHLRE7.714e-6277.33Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_CHLRE2.403e-5563.53Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF3_ANASP1.509e-4965.33Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_GRATL1.971e-4962.18Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF1_SYNY31.971e-4964.67Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_TRIEI5.734e-4963.33Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31008E10EF AbioticL1 Citrus clementina cDNA clone C31008E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869103 ID=FC869103; Name=FC869103; organism=Citrus clementina; type=EST; length=686bp
CTCTCTAGTTCTCCTCCTGGTTCGAGAAATGGCAGCTGAGATGGCACTGG
TCAAACCGATTAGCAAATTCAGCACCATCGCCACCACTACTAAGCCTAGG
TTCAGCTACCCGAAAGCAACATGTACATCTCTGAGCACAAGATTTTGTAC
AATCAAAATGTCAGCAACTTCAGAGCAAGCGGCTGCTGCCGCTGCCCAAA
AGCCAAGCAAGAAATCAAACAAAACTGCTATCAAGGAGACCCTTCTGACA
CCAAGGTTTTATACAACAGATTTTGATGAAATGGAGACCCTTTTCAACAC
TGAGATCAACAAGAAGCTCAACCAGGCTGAATTTGAGGCATTGCTTCAAG
AATTCAAGACTGATTATAACCAGACTCACTTTGTGAGGAACAAGGAGTTC
AAGGAAGCTGCTGACAAGATGCAAGGCCCTCTCAGGCAGATCTTTGTTGA
GTTCTTGGAGAGGTCTTGCACTGCTGAGTTCTCTGGTTTCCTTCTTTACA
AAGAGCTCGGAAGGAGACTCAAGAAAACCAACCCAGTGGTAGCTGAGATT
TTCTCTCTGATGTCCAGGGATGAAGCCAGGCATGCCGGGTTTCTGAACAA
GGGGCTATCTGAATTCAATTATGCATTGGACTTGGGCTTCCTGACAAAGC
TAGGAAATACACATTTTTTCAGCCAAAGTTTATCTT
back to top