FC869264

Overview
NameFC869264
Unique NameFC869264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_XANOR (GTP-binding protein era homolog OS=Xanthomonas oryzae pv. oryzae GN=era PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18
Identity = 41/80 (51.25%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:  409 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            H+SG VAV+G+PNVGKSTL N ++G K+SIV+N+PQTT+HR+LGI + PE Q++L DTPG+  ++   ++ +M +  R +
Sbjct:    8 HRSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKRAMNRVMNRAARGS 87
[Close]
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_XANOM (GTP-binding protein era homolog OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=era PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18
Identity = 41/80 (51.25%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:  409 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            H+SG VAV+G+PNVGKSTL N ++G K+SIV+N+PQTT+HR+LGI + PE Q++L DTPG+  ++   ++ +M +  R +
Sbjct:    8 HRSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKRAMNRVMNRAARGS 87
[Close]
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_XANC5 (GTP-binding protein era homolog OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=era PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18
Identity = 41/80 (51.25%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:  409 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            H+SG VAV+G+PNVGKSTL N ++G K+SIV+N+PQTT+HR+LGI + PE Q++L DTPG+  ++   ++ +M +  R +
Sbjct:    8 HRSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKRAMNRVMNRAARGS 87
[Close]
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_XANAC (GTP-binding protein era homolog OS=Xanthomonas axonopodis pv. citri GN=era PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18
Identity = 41/80 (51.25%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:  409 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            H+SG VAV+G+PNVGKSTL N ++G K+SIV+N+PQTT+HR+LGI + PE Q++L DTPG+  ++   ++ +M +  R +
Sbjct:    8 HRSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLVLVDTPGLHREQKRAMNRVMNRAARGS 87
[Close]
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_XYLFT (GTP-binding protein era homolog OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=era PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.503e-18
Identity = 40/80 (50.00%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:  409 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            ++ G +AV+G+PNVGKSTL N ++G K+SIV+N+PQTT+HR+LGI + PE Q+IL DTPG+  ++ H ++ +M +  R +
Sbjct:    7 YRCGRIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIILVDTPGLHREQKHPMNRLMNRTARGS 86
[Close]
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_XYLF2 (GTP-binding protein era homolog OS=Xylella fastidiosa (strain M23) GN=era PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.503e-18
Identity = 40/80 (50.00%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:  409 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            ++ G +AV+G+PNVGKSTL N ++G K+SIV+N+PQTT+HR+LGI + PE Q+IL DTPG+  ++ H ++ +M +  R +
Sbjct:    7 YRCGRIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIILVDTPGLHREQKHPMNRLMNRTARGS 86
[Close]
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_XYLFM (GTP-binding protein era homolog OS=Xylella fastidiosa (strain M12) GN=era PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18
Identity = 39/80 (48.75%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:  409 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            ++ G +AV+G+PNVGKSTL N ++G K+SIV+N+PQTT+HR+LGI + PE Q++L DTPG+  ++ H ++ +M +  R +
Sbjct:    7 YRCGRIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIVLVDTPGLHREQKHPMNRLMNRTARGS 86
[Close]
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_XYLFA (GTP-binding protein era homolog OS=Xylella fastidiosa GN=era PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18
Identity = 39/80 (48.75%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:  409 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            ++ G +AV+G+PNVGKSTL N ++G K+SIV+N+PQTT+HR+LGI + PE Q++L DTPG+  ++ H ++ +M +  R +
Sbjct:    7 YRCGRIAVIGRPNVGKSTLTNALVGTKISIVSNRPQTTRHRLLGIATFPEGQIVLVDTPGLHREQKHPMNRLMNRTARGS 86
[Close]
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_XANCP (GTP-binding protein era homolog OS=Xanthomonas campestris pv. campestris GN=era PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18
Identity = 41/80 (51.25%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:  409 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            H+SG VAV+G+PNVGKSTL N ++G K+SIV+N+PQTT+HR+LGI + PE Q++L DTPG+  ++   ++ +M +  R +
Sbjct:    7 HRSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLMLVDTPGLHREQKRAMNRVMNRAARGS 86
[Close]
BLAST of FC869264 vs. ExPASy Swiss-Prot
Match: ERA_XANCB (GTP-binding protein era homolog OS=Xanthomonas campestris pv. campestris (strain B100) GN=era PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18
Identity = 41/80 (51.25%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:  409 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTKHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 648
            H+SG VAV+G+PNVGKSTL N ++G K+SIV+N+PQTT+HR+LGI + PE Q++L DTPG+  ++   ++ +M +  R +
Sbjct:    7 HRSGSVAVIGRPNVGKSTLTNALVGAKVSIVSNRPQTTRHRLLGIATFPEGQLMLVDTPGLHREQKRAMNRVMNRAARGS 86
The following BLAST results are available for this feature:
BLAST of FC869264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
ERA_XANOR1.916e-1851.25GTP-binding protein era homolog OS=Xanthomonas ory... [more]
ERA_XANOM1.916e-1851.25GTP-binding protein era homolog OS=Xanthomonas ory... [more]
ERA_XANC51.916e-1851.25GTP-binding protein era homolog OS=Xanthomonas cam... [more]
ERA_XANAC1.916e-1851.25GTP-binding protein era homolog OS=Xanthomonas axo... [more]
ERA_XYLFT2.503e-1850.00GTP-binding protein era homolog OS=Xylella fastidi... [more]
ERA_XYLF22.503e-1850.00GTP-binding protein era homolog OS=Xylella fastidi... [more]
ERA_XYLFM3.269e-1848.75GTP-binding protein era homolog OS=Xylella fastidi... [more]
ERA_XYLFA3.269e-1848.75GTP-binding protein era homolog OS=Xylella fastidi... [more]
ERA_XANCP3.269e-1851.25GTP-binding protein era homolog OS=Xanthomonas cam... [more]
ERA_XANCB3.269e-1851.25GTP-binding protein era homolog OS=Xanthomonas cam... [more]

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Properties
Property NameValue
Genbank descriptionC31010C11EF AbioticL1 Citrus clementina cDNA clone C31010C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869264 ID=FC869264; Name=FC869264; organism=Citrus clementina; type=EST; length=711bp
GAACCGATAAGAGAGAGAGATCGTTACTTGAGAGCAGGCGAATGAAATCA
ACATGAAAGCAAAGCTCCGATAATGGAGCTAGGTGTACACATATCCTCTT
CTTTTGGCAGTCTGTTCCCTCATTACAGCACATTAACAGCATATAGAGAA
ATTAAATTTGGGTTCCAAGGCAGAAGTAGTAGTATCACTTGTAGAAGCAA
TGAGCACCAAAGCCTTGTATTGTCAGAGAAAGAAGTACAGCAACAGAAGC
TTTGGAGTAACCAACGGGAAATGGACTTAGACGATGGTGATGAAATGGAA
TTTGACGATGCATCGTCGTTTCTATCTCTGTCTGAAAAACCAGACAGGAA
TATGGCTTCGCCGGACGACTACGAGATTGAAGAATTTGACTACGCCTCTC
ATCCAAATCACAAAAGCGGATATGTGGCAGTACTAGGGAAGCCAAATGTG
GGGAAAAGTACGCTCGCAAACCAAATGATCGGTCAAAAGCTCTCAATTGT
TACAAATAAGCCCCAAACTACAAAGCACCGTATTCTTGGTATCTGTTCTG
GTCCAGAGTATCAGATGATACTTTATGATACCCCTGGTATAATTGAGAAG
AAAATTCACATGTTGGACTCTATGATGATGAAGAATGTCCGCAGTGCTGG
GATTACGCTGACTGTATTGTTGTTCTCGTTGATGCTTGTAAGCTCCTGAA
GAATTGATGAA
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