FC869272

Overview
NameFC869272
Unique NameFC869272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_ARATH (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.343e-54
Identity = 114/190 (60.00%), Postives = 125/190 (65.79%), Query Frame = 2
Query:   92 MSLTIPTNLSKPLLKPRSNSQLSHA-KLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK 658
            MSLTIP NL   +L PRSN  L+ +   S     C                   ++AF             P PAVADISGLTPCK+SKQFAKR              YAP+SAPALA+ A +EKTKRRFDNYGKYGLLCGSDGLPHLIV+GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAISGEKK
Sbjct:    1 MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTPQS-------MKAFSAAVALSSILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIEKTKRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAISGEKK 180          
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_SPIOL (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.103e-54
Identity = 115/190 (60.53%), Postives = 121/190 (63.68%), Query Frame = 2
Query:   92 MSLTIPTNLSKPLL-KPRSNSQLSHAKLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK 658
            MS TIPTNL KPL  KP+  S  S A  SK +                        A              P  A+ADI+GLTPCKESKQFAKR              YA DSAPALAIKATMEKTK+RFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI  EKK
Sbjct:    1 MSFTIPTNLYKPLATKPKHLSSSSFAPRSKIVCQQENDQQQPKKLELAKVGANAAAALALSSVLLSSWSVAPDAAMADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAIKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKK 190          
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_FLATR (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.800e-52
Identity = 112/191 (58.64%), Postives = 120/191 (62.83%), Query Frame = 2
Query:   92 MSLTIPTNLSKPL--LKPRSNSQLSHAKLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK 658
            MS TI T+  +PL     +S+   S +K++   I C                   L A                PA ADISGLTPCKESKQFAKR              YAPDSAPALAIKATMEKTKRRFDNYGK GLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI  EKK
Sbjct:    1 MSFTISTSFLQPLEISNLKSSPITSKSKVTSTSIVCSGSTDEKINNADGKSSLKALSAALALSSILVSSTVPALPASADISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKK 191          
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_HORVU (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 6.896e-51
Identity = 94/119 (78.99%), Postives = 102/119 (85.71%), Query Frame = 2
Query:  302 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK 658
            P PA ADI+GLTPCKESK FAKR              YAPDSAPALAI+AT++KTKRRF+NYGK+GLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+SGEKK
Sbjct:   72 PPPAAADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKK 190          
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_CHLRE (Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAF PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.839e-29
Identity = 67/123 (54.47%), Postives = 80/123 (65.04%), Query Frame = 2
Query:  302 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLI----VSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK 658
            P  A+ADI+GLTPC ESK +AK               Y  DSAPA+A+KATME+TK RF NY K GLLCG+DGLPHLI    ++    H GE   P   FLY+AG+IG+VGR YLIA+ GE K
Sbjct:   57 PSAAMADIAGLTPCSESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFANYAKAGLLCGNDGLPHLIADPGLALKYGHAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAK 179          

HSP 2 Score: 21.1718 bits (43), Expect = 2.839e-29
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  667 KEIIIDVPL 693
            KEIIIDVPL
Sbjct:  183 KEIIIDVPL 191          
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_GUITH (Photosystem I reaction center subunit III OS=Guillardia theta GN=psaF PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.420e-29
Identity = 58/111 (52.25%), Postives = 72/111 (64.86%), Query Frame = 2
Query:  302 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYL 634
            P  + AD++GL PCK SK+F +R              Y P++ P LA++  + KTK RF  YG  GLLCG+DGLPHLI  G   H GEF+ PGL FLYIAGWIGWVGR+Y+
Sbjct:   17 PVASHADVAGLVPCKNSKEFQRRLDSSVKKLESRLSKYEPNTPPYLALETQINKTKNRFTQYGNAGLLCGTDGLPHLIADGRWSHAGEFMVPGLFFLYIAGWIGWVGRNYV 127          
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_PORYE (Photosystem I reaction center subunit III OS=Porphyra yezoensis GN=psaF PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.682e-28
Identity = 60/119 (50.42%), Postives = 75/119 (63.03%), Query Frame = 2
Query:  302 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK 658
            P  A A+++GL PCK+S  F KR              Y  D+ PALA+   +EKTK RF  YG+ GLLCG+DGLPHLI  G     G+F+ PGLLFLYI GWIGWVGR YL++++   K
Sbjct:   15 PIIANAEVAGLVPCKDSAAFNKRMVNSVKKLQARLAKYDADTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSK 133          
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_CYAPA (Photosystem I reaction center subunit III OS=Cyanophora paradoxa GN=psaF PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.281e-28
Identity = 66/150 (44.00%), Postives = 83/150 (55.33%), Query Frame = 2
Query:  305 QPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKRP*RR-----------SSLMFLWASGGLQRFS 721
            +P  AD++GL PC +S  F +R              Y P SAPA A++  ++KT++RFD Y   GLLCG+DGLPHLI  G   H GEF  PGLLFLYIAG+IGW GRSYL A++       +             S  F+W    LQ FS
Sbjct:   21 RPVRADVAGLIPCSQSDAFERRLKNTTQRLENRLKKYEPGSAPAEALQKQIDKTQQRFDKYRNSGLLCGADGLPHLITDGRWSHAGEFTIPGLLFLYIAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWPLAALQEFS 170          
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_PORPU (Photosystem I reaction center subunit III OS=Porphyra purpurea GN=psaF PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.117e-27
Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = 2
Query:  317 ADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK 658
            A+++GL PCK+S  F KR              Y  ++ PALA+   +EKTK RF  YG+ GLLCG+DGLPHLI  G     G+F+ PGLLFLYI GWIGWVGR YL++++   K
Sbjct:   24 AEVAGLIPCKDSAAFNKRMVNSVKKLQARLAKYDANTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSK 137          
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_ODOSI (Photosystem I reaction center subunit III OS=Odontella sinensis GN=psaF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27
Identity = 60/118 (50.85%), Postives = 71/118 (60.17%), Query Frame = 2
Query:  302 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEK 655
            P  A+ADI GLT C ES  F KR              Y   S PALA++  +E+T+ RFD Y +  LLCG+DGLPHLI  G   H  EFI PG  F+YI+GWIGWVGR YL A+S  K
Sbjct:   19 PNRALADIGGLTKCSESPAFEKRLKASVKKLEQRMGKYEAGSPPALALQQQIERTQARFDKYSRSELLCGTDGLPHLIADGRWSHAAEFILPGFGFIYISGWIGWVGRKYLRAVSTTK 136          
The following BLAST results are available for this feature:
BLAST of FC869272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSAF_ARATH1.343e-5460.00Photosystem I reaction center subunit III, chlorop... [more]
PSAF_SPIOL5.103e-5460.53Photosystem I reaction center subunit III, chlorop... [more]
PSAF_FLATR2.800e-5258.64Photosystem I reaction center subunit III, chlorop... [more]
PSAF_HORVU6.896e-5178.99Photosystem I reaction center subunit III, chlorop... [more]
PSAF_CHLRE2.839e-2954.47Photosystem I reaction center subunit III, chlorop... [more]
PSAF_GUITH7.420e-2952.25Photosystem I reaction center subunit III OS=Guill... [more]
PSAF_PORYE3.682e-2850.42Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_CYAPA6.281e-2844.00Photosystem I reaction center subunit III OS=Cyano... [more]
PSAF_PORPU3.117e-2750.00Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_ODOSI5.317e-2750.85Photosystem I reaction center subunit III OS=Odont... [more]

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Properties
Property NameValue
Genbank descriptionC31010D09EF AbioticL1 Citrus clementina cDNA clone C31010D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869272 ID=FC869272; Name=FC869272; organism=Citrus clementina; type=EST; length=733bp
ACTGACAAAATCATTTCACGTCCATCTCCGCTTCTCCATTAGACACTCAC
ACACACTCACCCTGAAAGAAAAGAAGAAAAGGAAAAAGAAGATGTCTCTG
ACAATTCCAACAAATCTTTCAAAACCCCTATTGAAGCCAAGATCAAACTC
TCAGTTGAGCCATGCAAAATTATCGAAACAAATGATCACGTGCTCTTCTT
CTGCTGGTTCTGAAGAGACTTCCTCTTCTTCTGGCAAGGCCGCCAAGCCG
CTCCAGGCTTTCTCAGCAGCCCTTGCGCTTTCCTCAATTCTGCTATCAGC
CCCACAGCCCGCAGTTGCCGACATCAGCGGCCTCACCCCCTGCAAAGAGT
CCAAACAATTCGCCAAGCGCGAGAAGCAGCAGCTCAAGAAGCTCGAGTCT
TCACTAAAACTGTACGCTCCCGACAGCGCCCCGGCTCTCGCAATCAAAGC
CACCATGGAGAAGACGAAACGGCGGTTTGACAACTACGGGAAGTACGGGT
TGCTGTGCGGGTCAGATGGGTTGCCGCATCTGATTGTGAGCGGTGACCAG
AGGCACTGGGGTGAGTTTATCACTCCGGGGTTGTTGTTTTTGTACATAGC
TGGATGGATCGGGTGGGTTGGCAGGAGCTACTTGATCGCCATTAGCGGTG
AAAAGAAGCGGCCATGAAGGAGATCATCATTGATGTTCCTTTGGGCTTCA
GGTGGTCTTCAGAGGTTTAGCTGCCTGTTGCTG
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