FC869272
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_ARATH (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 1.343e-54 Identity = 114/190 (60.00%), Postives = 125/190 (65.79%), Query Frame = 2 Query: 92 MSLTIPTNLSKPLLKPRSNSQLSHA-KLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK 658 MSLTIP NL +L PRSN L+ + S C ++AF P PAVADISGLTPCK+SKQFAKR YAP+SAPALA+ A +EKTKRRFDNYGKYGLLCGSDGLPHLIV+GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAISGEKK Sbjct: 1 MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTPQS-------MKAFSAAVALSSILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIEKTKRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAISGEKK 180
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_SPIOL (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 5.103e-54 Identity = 115/190 (60.53%), Postives = 121/190 (63.68%), Query Frame = 2 Query: 92 MSLTIPTNLSKPLL-KPRSNSQLSHAKLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK 658 MS TIPTNL KPL KP+ S S A SK + A P A+ADI+GLTPCKESKQFAKR YA DSAPALAIKATMEKTK+RFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI EKK Sbjct: 1 MSFTIPTNLYKPLATKPKHLSSSSFAPRSKIVCQQENDQQQPKKLELAKVGANAAAALALSSVLLSSWSVAPDAAMADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAIKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKK 190
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_FLATR (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 2.800e-52 Identity = 112/191 (58.64%), Postives = 120/191 (62.83%), Query Frame = 2 Query: 92 MSLTIPTNLSKPL--LKPRSNSQLSHAKLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK 658 MS TI T+ +PL +S+ S +K++ I C L A PA ADISGLTPCKESKQFAKR YAPDSAPALAIKATMEKTKRRFDNYGK GLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI EKK Sbjct: 1 MSFTISTSFLQPLEISNLKSSPITSKSKVTSTSIVCSGSTDEKINNADGKSSLKALSAALALSSILVSSTVPALPASADISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKK 191
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_HORVU (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2) HSP 1 Score: 200.675 bits (509), Expect = 6.896e-51 Identity = 94/119 (78.99%), Postives = 102/119 (85.71%), Query Frame = 2 Query: 302 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK 658 P PA ADI+GLTPCKESK FAKR YAPDSAPALAI+AT++KTKRRF+NYGK+GLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+SGEKK Sbjct: 72 PPPAAADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKK 190
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_CHLRE (Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAF PE=1 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.839e-29 Identity = 67/123 (54.47%), Postives = 80/123 (65.04%), Query Frame = 2 Query: 302 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLI----VSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK 658 P A+ADI+GLTPC ESK +AK Y DSAPA+A+KATME+TK RF NY K GLLCG+DGLPHLI ++ H GE P FLY+AG+IG+VGR YLIA+ GE K Sbjct: 57 PSAAMADIAGLTPCSESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFANYAKAGLLCGNDGLPHLIADPGLALKYGHAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAK 179 HSP 2 Score: 21.1718 bits (43), Expect = 2.839e-29 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 667 KEIIIDVPL 693 KEIIIDVPL Sbjct: 183 KEIIIDVPL 191
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_GUITH (Photosystem I reaction center subunit III OS=Guillardia theta GN=psaF PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 7.420e-29 Identity = 58/111 (52.25%), Postives = 72/111 (64.86%), Query Frame = 2 Query: 302 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYL 634 P + AD++GL PCK SK+F +R Y P++ P LA++ + KTK RF YG GLLCG+DGLPHLI G H GEF+ PGL FLYIAGWIGWVGR+Y+ Sbjct: 17 PVASHADVAGLVPCKNSKEFQRRLDSSVKKLESRLSKYEPNTPPYLALETQINKTKNRFTQYGNAGLLCGTDGLPHLIADGRWSHAGEFMVPGLFFLYIAGWIGWVGRNYV 127
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_PORYE (Photosystem I reaction center subunit III OS=Porphyra yezoensis GN=psaF PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.682e-28 Identity = 60/119 (50.42%), Postives = 75/119 (63.03%), Query Frame = 2 Query: 302 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK 658 P A A+++GL PCK+S F KR Y D+ PALA+ +EKTK RF YG+ GLLCG+DGLPHLI G G+F+ PGLLFLYI GWIGWVGR YL++++ K Sbjct: 15 PIIANAEVAGLVPCKDSAAFNKRMVNSVKKLQARLAKYDADTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSK 133
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_CYAPA (Photosystem I reaction center subunit III OS=Cyanophora paradoxa GN=psaF PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.281e-28 Identity = 66/150 (44.00%), Postives = 83/150 (55.33%), Query Frame = 2 Query: 305 QPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKRP*RR-----------SSLMFLWASGGLQRFS 721 +P AD++GL PC +S F +R Y P SAPA A++ ++KT++RFD Y GLLCG+DGLPHLI G H GEF PGLLFLYIAG+IGW GRSYL A++ + S F+W LQ FS Sbjct: 21 RPVRADVAGLIPCSQSDAFERRLKNTTQRLENRLKKYEPGSAPAEALQKQIDKTQQRFDKYRNSGLLCGADGLPHLITDGRWSHAGEFTIPGLLFLYIAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWPLAALQEFS 170
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_PORPU (Photosystem I reaction center subunit III OS=Porphyra purpurea GN=psaF PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.117e-27 Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = 2 Query: 317 ADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK 658 A+++GL PCK+S F KR Y ++ PALA+ +EKTK RF YG+ GLLCG+DGLPHLI G G+F+ PGLLFLYI GWIGWVGR YL++++ K Sbjct: 24 AEVAGLIPCKDSAAFNKRMVNSVKKLQARLAKYDANTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSK 137
BLAST of FC869272 vs. ExPASy Swiss-Prot
Match: PSAF_ODOSI (Photosystem I reaction center subunit III OS=Odontella sinensis GN=psaF PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27 Identity = 60/118 (50.85%), Postives = 71/118 (60.17%), Query Frame = 2 Query: 302 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEK 655 P A+ADI GLT C ES F KR Y S PALA++ +E+T+ RFD Y + LLCG+DGLPHLI G H EFI PG F+YI+GWIGWVGR YL A+S K Sbjct: 19 PNRALADIGGLTKCSESPAFEKRLKASVKKLEQRMGKYEAGSPPALALQQQIERTQARFDKYSRSELLCGTDGLPHLIADGRWSHAAEFILPGFGFIYISGWIGWVGRKYLRAVSTTK 136 The following BLAST results are available for this feature:
BLAST of FC869272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869272 ID=FC869272; Name=FC869272; organism=Citrus clementina; type=EST; length=733bpback to top |