FC869274

Overview
NameFC869274
Unique NameFC869274
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869274 vs. ExPASy Swiss-Prot
Match: TOCC_ARATH (Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.227e-50
Identity = 97/155 (62.58%), Postives = 116/155 (74.84%), Query Frame = 2
Query:  179 RTVEHLDSTLRPLLYTKR--RHFNRVLVLASSAQT-VGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRA 634
            R V  L  +L P   TK   R  +RV    S+  +    +SV PVY PT  NRELRTPHSGYHFDG+ R+FFEGWYFRVSIPE+++SFC +YSVENPAF++ LS LEVA +GPRFTGVG QILGA+DKY+C Y ++S NFWG RHEL+LGNTF A
Sbjct:   21 RPVSPLTRSLVPFRSTKLVPRSISRVSASISTPNSETDKISVKPVYVPTSPNRELRTPHSGYHFDGTPRKFFEGWYFRVSIPEKRESFCFMYSVENPAFRQSLSPLEVALYGPRFTGVGAQILGANDKYLCQYEQDSHNFWGDRHELVLGNTFSA 175          
BLAST of FC869274 vs. ExPASy Swiss-Prot
Match: TOCC_MAIZE (Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.756e-47
Identity = 86/144 (59.72%), Postives = 110/144 (76.39%), Query Frame = 2
Query:  224 TKRRHFNRVLVLASSAQTVGG-----VSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADK 640
            + RRH  R +V  +++ +V        +  P+Y PTP++R LRTPHSGYHFDG+ R FFEGWYF+VSIPE +QSFC +YSVENP F+  +S L+   + PRFTGVG QILGADDKY+C +SE+S+NFWGSRHELMLGNTF ++K
Sbjct:   23 SSRRHCPRGVVPRAASSSVSSFTSPSAAAAPIYTPTPQDRSLRTPHSGYHFDGTARPFFEGWYFKVSIPECRQSFCFMYSVENPLFRDGMSDLDKLLYRPRFTGVGAQILGADDKYICQFSEKSNNFWGSRHELMLGNTFISNK 166          
The following BLAST results are available for this feature:
BLAST of FC869274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TOCC_ARATH2.227e-5062.58Tocopherol cyclase, chloroplastic OS=Arabidopsis t... [more]
TOCC_MAIZE8.756e-4759.72Probable tocopherol cyclase, chloroplastic OS=Zea ... [more]
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Properties
Property NameValue
Genbank descriptionC31010D11EF AbioticL1 Citrus clementina cDNA clone C31010D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869274 ID=FC869274; Name=FC869274; organism=Citrus clementina; type=EST; length=670bp
CTGCGTGTGTATATCTGTTTAAAAGTATTAGATTTGTTATAGAATAAACA
GAACCTAATTACTGGGTAAAGAAATAAACACATACGCACTAGCAGCAGCG
TACCCGCGGTTTTTTCACTTCCCATTTCTCTGTTTTCAGATGGAATCAAA
TCTTTGCTTCTCACAAAACTTAGGGTTCCGAACTGTAGAGCACCTCGACT
CTACTCTTAGACCCTTGCTTTATACAAAACGCCGTCATTTCAACAGAGTG
TTGGTGTTGGCTTCTTCAGCTCAAACTGTGGGCGGAGTCTCCGTCAATCC
TGTTTATAAGCCAACGCCACGCAATCGAGAGCTTCGAACTCCTCACAGCG
GGTACCATTTTGATGGGAGTACTCGTAGGTTTTTTGAGGGTTGGTATTTT
AGGGTCTCAATTCCAGAGCGAAAGCAAAGCTTTTGCATTATTTATTCGGT
GGAGAATCCTGCATTTAAGAAAAAATTATCGTCATTGGAAGTTGCACAGC
ATGGACCTAGATTTACAGGAGTTGGGGTTCAAATTCTTGGCGCCGATGAC
AAGTATATGTGCCATTACTCTGAAGAGTCTTCAAACTTTTGGGGAAGTAG
GCACGAGCTGATGCTGGGGAATACTTTCAGAGCTGATAAGGTTCACAGCC
TCCAACTAAGGAGGNTCCTC
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