FC869281

Overview
NameFC869281
Unique NameFC869281
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.253e-35
Identity = 88/175 (50.29%), Postives = 106/175 (60.57%), Query Frame = 1
Query:  115 MSPKSDMIIKFTEHVVTTDKPIIS------TPAPQKLVRIILXXXXXXXXXXXXEQVINHVRRVKRHVKQINLNNXXXXXXXXXXXXXXSNKLQHNKKI-KRHAHQPPPQSEVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFP 618
            M+  S  +IKFT+H+VTT+K + S          Q++VRIIL            ++  N VRRVKRHV +INL                   +   K I  R      P S+VT RKKFRGVR+RPWGRWAAEIRDP R KR+WLGT+DTPEEAA VYD+AAVKLKG +AVTNFP
Sbjct:    1 MTENSVPVIKFTQHIVTTNKHVFSEHNEKSNSELQRVVRIILTDADATDSSD--DEGRNTVRRVKRHVTEINL-------------------MPSTKSIGDRKRRSVSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFP 154          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 1
Query:  280 RRVKRHVKQINLNNXXXXXXXXXXXXXXSNKLQHNKKIKRHAHQPPPQSEVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPVLT 633
            RRVK++VK++ L++              S+K +  KK ++      P    T  +KFRGVR+RPWG+WAAEIRDP+RR R+WLGTFDT EEAA VYD AA++L+G NA  NFP P +T
Sbjct:   43 RRVKKYVKEVVLDSVV------------SDKEKPMKKKRKKRVVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPPPVT 148          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.818e-23
Identity = 64/176 (36.36%), Postives = 92/176 (52.27%), Query Frame = 1
Query:  139 IKFTEHVVTTDKPIISTPAPQK--------LVRIILXXXXXXXXXXXXEQVINHVRRVKRHVKQINLNNXXXXXXXXXXXXXXSNKLQHNKKIKRHAHQPPPQSEVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNF-----PNPV 627
            +K+TEH     K    +   +K        LVR+ +            E+ +   RRVKR + +I +                ++  +  K+I   +    P     ++KK+RGVR+RPWG+WAAEIRDP +R+R+WLGTF T EEAA VYD AA+KL+G +A+TNF     P PV
Sbjct:   11 VKYTEHKTVIRKYTKKSSMERKTSVRDSARLVRVSMTDRDATDSSSDEEEFLFPRRRVKRLINEIRVE-----PSSSSTGDVSASPTKDRKRINVDSTVQKPSVSGQNQKKYRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQPEPEPV 181          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22
Identity = 63/169 (37.28%), Postives = 93/169 (55.03%), Query Frame = 1
Query:  139 IKFTEHVVTTDKPI--ISTPAPQKLVRIILXXXXXXXXXXXXEQ-----VINHVRRVKRHVKQINLNNXXXXXXXXXXXXXXSNKLQHNKKIKRHAHQPPPQSEVTH---RKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNF 615
            IKFTEH   T   +  ++     +++RI +            E+      ++  RRVK+ V ++ L++               +K +  + +K  +   P  S  T     KKFRGVR+RPWG+WAAEIRDP +R RLWLGT++T EEAA VYD AA++L+G +A+TNF
Sbjct:   12 IKFTEHKTNTTTIVSELTNTHQTRILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKKFVNEVYLDSGAVVTGSCGQM---ESKKRQKRAVKSESTVSPVVSATTTTTGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 1
Query:  280 RRVKRHVKQINLN---NXXXXXXXXXXXXXXSNKLQHNKKIKRHAHQPPPQSEVTHR-KKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNP 624
            RRVKR V +I +    N              S+     +       +P  +  V+ + KKFRGVR+RPWG+WAAEIRDP +R+R+WLGTF+T EEAA VYD AA++L+G +A+TNF  P
Sbjct:   65 RRVKRFVNEITVEPSCNNVVTGVSMKDRKRLSSSSDETQSPASSRQRPNNKVSVSGQIKKFRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSIP 183          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 1
Query:  409 QPPPQSEVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPV 627
            Q  P  +   R+ +RGVR+RPWG+WAAEIRDP +  R+WLGTF+T EEAA  YD+AA+K KG  A  NFP  V
Sbjct:   26 QHQPDQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERV 98          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 63/164 (38.41%), Postives = 84/164 (51.22%), Query Frame = 1
Query:  139 IKFTEHVVTTDKPIISTPAPQKLVRIILXXXXXXXXXXXXEQVINH--VRRVKRHVKQINLNNXXXXXXXXXXXXXXSNKLQHNKKIKRHAHQPPPQSEVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNP 624
            +KFTE+   T+     +    +LVRI +            +   N   V RVKR+VK+I                  + K +H  K +         S     KK+RGVR+RPWG++AAEIRDP+ R R+WLGTF T EEAA  YD+AA+ LKG  A+TNF  P
Sbjct:    8 VKFTENRTVTNVAATPSNGSPRLVRITVTDPFATDSSSDDDDNNNVTVVPRVKRYVKEIRF------CQGESSSSTAARKGKH--KEEESVVVEDDVSTSVKPKKYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTP 163          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.123e-18
Identity = 39/58 (67.24%), Postives = 50/58 (86.21%), Query Frame = 1
Query:  445 KFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFP 618
            ++RGVR+RPWGR+AAEIRDP ++ R+WLGTFDTPEEAA  YD+ A++ +GA A TNFP
Sbjct:   19 RYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  439 RKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPVLTGDD 642
            R+ +RGVR+RPWG+WAAEIRDP +  R+WLGTF+T E AA  YD+AA+K KG+ A  NFP  V  G +
Sbjct:   87 RRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERVQLGSN 154          
BLAST of FC869281 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.503e-18
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  418 PQSEVTHRKKFRGVRRRPWGRWAAEIRDPNRRKRLWLGTFDTPEEAASVYDQAAVKLKGANAVTNFPNPV 627
            P+     ++++RGVR+RPWG+WAAEIRDP+R  R+WLGTFDT E AA  YD+AA++ +G  A  NFP  V
Sbjct:   67 PEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDV 136          
The following BLAST results are available for this feature:
BLAST of FC869281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
PTI6_SOLLC2.253e-3550.29Pathogenesis-related genes transcriptional activat... [more]
CRF1_ARATH1.370e-2450.00Ethylene-responsive transcription factor CRF1 OS=A... [more]
CRF4_ARATH9.818e-2336.36Ethylene-responsive transcription factor CRF4 OS=A... [more]
CRF2_ARATH3.731e-2237.28Ethylene-responsive transcription factor CRF2 OS=A... [more]
CRF3_ARATH2.418e-2145.38Ethylene-responsive transcription factor CRF3 OS=A... [more]
EF113_ARATH2.956e-1957.53Ethylene-responsive transcription factor ERF113 OS... [more]
CRF6_ARATH2.956e-1938.41Ethylene-responsive transcription factor CRF6 OS=A... [more]
ERF76_ARATH1.123e-1867.24Ethylene-responsive transcription factor 11 OS=Ara... [more]
EF114_ARATH1.916e-1858.82Ethylene-responsive transcription factor ERF114 OS... [more]
EF110_ARATH2.503e-1855.71Ethylene-responsive transcription factor ERF110 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31010E06EF AbioticL1 Citrus clementina cDNA clone C31010E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869281 ID=FC869281; Name=FC869281; organism=Citrus clementina; type=EST; length=711bp
GGACTCCTCCCAATTTCAGTTCGCAGTTCTCTCTAGCTCTTTAATTTCTA
TTCCTTGATCACTTGCTCTCAAATCTCTTTCCCGCCAAAATCTGCTGCGG
TTTTGGCCTTGTTCATGTCTCCAAAATCCGACATGATCATCAAGTTCACT
GAACACGTGGTCACTACCGATAAGCCCATAATCAGTACTCCAGCACCTCA
AAAACTTGTTCGAATCATACTTACCGACGCTGACGCCACCGATTCTTCCA
GCGATGATGAACAAGTAATTAACCACGTTCGAAGAGTCAAACGACATGTC
AAACAAATCAACCTTAATAATCATCATCGACGACGACACCAACAGCAGCA
ACGAGGACAACAGAGCAATAAGCTTCAGCATAATAAGAAGATAAAGAGAC
ATGCGCACCAACCGCCGCCGCAAAGTGAAGTCACTCACCGGAAAAAGTTC
CGGGGAGTCCGCCGGAGACCATGGGGAAGATGGGCCGCCGAGATCCGAGA
CCCCAATCGGAGGAAACGCCTCTGGCTTGGCACTTTTGACACTCCTGAAG
AAGCTGCCTCTGTTTATGATCAAGCTGCTGTCAAGCTTAAAGGCGCTAAC
GCCGTTACAAACTTCCCCAACCCCGTTTTAACGGGAGATGATGTCGTTAA
CGGTCAACGTCAACGGACAGGCGTTGATTCGTTTGACTCCTCTGACATTA
GCTCTCTGTCG
back to top