FC870530

Overview
NameFC870530
Unique NameFC870530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length593
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.305e-37
Identity = 77/89 (86.52%), Postives = 82/89 (92.13%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 270
            TVRL+  ASYDEIKAAIK  SEGKLKGILGYTEDDVVSTDF+GD+RSSIFDAKAGIALS  FVKLVSWYDNEWGYS+RV+DLIVHMA T
Sbjct:  251 TVRLEKPASYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVIDLIVHMAST 339          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.907e-37
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            TVRL+  A+YDEIK AIK  SEGKLKGILGYTEDDVVSTDFVGD+RSSIFDAKAGIALS KFVKLVSWYDNEWGYS+RVVDLIVHM+K
Sbjct:  250 TVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.907e-37
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 273
            TVRL+  A+Y++IKAAIK  SEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYSTRVVDLIVHMA  Q
Sbjct:  248 TVRLEKKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIVHMASVQ 337          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.476e-37
Identity = 76/87 (87.36%), Postives = 81/87 (93.10%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 264
            TVRL+  ASYD+IKAAIK  SEGKLKGILG+TEDDVVSTDFVGDSRSSIFDAKAGIALSK FVKLVSWYDNEWGYS+RV+DLI HMA
Sbjct:  237 TVRLEKEASYDDIKAAIKEESEGKLKGILGFTEDDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLICHMA 323          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.476e-37
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 273
            TVRL+  A+YDEIKAAIKA SEG LKGILGYTED VVSTDF+GDSRSSIFDA+AGIALS  FVKLVSWYDNEWGYS+RVVDLIVHMA TQ
Sbjct:  251 TVRLEKSATYDEIKAAIKAESEGNLKGILGYTEDAVVSTDFIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYSSRVVDLIVHMAATQ 340          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.105e-36
Identity = 75/88 (85.23%), Postives = 81/88 (92.05%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            TVRL+  A+YDEIK AIK  S+GKLKGILGYTEDDVVSTDFVGD+RSSIFDAKAGIALS  FVKLVSWYDNEWGYSTRVVDLI+HM+K
Sbjct:  250 TVRLEKAATYDEIKKAIKEESQGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSTRVVDLIIHMSK 337          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.214e-36
Identity = 76/88 (86.36%), Postives = 82/88 (93.18%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 267
            TVRL+  A+YDEIKAAIK  SEGKLKGILGYTEDDVVSTDF+GD+RSSIFDAKAGIAL+ KFVKLVSWYDNE GYSTRVVDLIVH+AK
Sbjct:  249 TVRLEKAATYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDTRSSIFDAKAGIALNDKFVKLVSWYDNELGYSTRVVDLIVHIAK 336          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.352e-36
Identity = 74/90 (82.22%), Postives = 80/90 (88.89%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 273
            TVR +  ASYD+IK AIKA SEGKLKGI+GY E+D+VSTDFVGDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI HMAKTQ
Sbjct:  248 TVRTEKAASYDDIKKAIKAASEGKLKGIMGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMAKTQ 337          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.352e-36
Identity = 74/90 (82.22%), Postives = 82/90 (91.11%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 273
            TVRL+  A+Y +IKAAIK  SEGKLKGILGYTEDDVVSTDF+GD+RSSIFDAKAGIAL+   VKLVSWYDNEWGYS+RVVDLIVHM+KTQ
Sbjct:  249 TVRLEKKATYADIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALNDNCVKLVSWYDNEWGYSSRVVDLIVHMSKTQ 338          
BLAST of FC870530 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.595e-35
Identity = 73/89 (82.02%), Postives = 80/89 (89.89%), Query Frame = 1
Query:    4 TVRLDPYASYDEIKAAIKALSEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 270
            TV+L+  A+Y EIKAAIK  SEGKLKGILGYTEDDVVSTDF+GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS+RV+DLIVHM  T
Sbjct:  251 TVKLEKSATYGEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVIDLIVHMDST 339          
The following BLAST results are available for this feature:
BLAST of FC870530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
G3PC_GINBI1.305e-3786.52Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH2.907e-3787.50Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA2.907e-3785.56Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC6.476e-3787.36Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY6.476e-3785.56Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL1.105e-3685.23Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA3.214e-3686.36Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU9.352e-3682.22Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_RANAC9.352e-3682.22Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA1.595e-3582.02Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3CF09ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3CF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870530 ID=FC870530; Name=FC870530; organism=Citrus clementina; type=EST; length=593bp
GGGACAGTGAGGCTGGACCCTTATGCTTCTTATGATGAAATCAAAGCTGC
CATCAAGGCGCTTTCAGAGGGGAAACTAAAGGGTATCTTGGGATACACTG
AGGATGATGTGGTATCCACCGACTTTGTTGGTGACAGTAGGTCAAGTATC
TTTGATGCCAAGGCTGGTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGT
CTCATGGTATGACAATGAGTGGGGCTACAGTACTCGTGTGGTGGATTTGA
TTGTCCACATGGCGAAAACCCAGTAACTTACTCGGCGTGGCTTGAGTATG
TAACACGCTTAGTTGTGCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGT
GTTTCTTTGCGCTAAATGTGGTGTTTGTGTTTCTATGTAGAGGGTCTGAG
TTTAAATAAAATTGTTTCCAAGACATTATCCAGAGCCTTACCTGCTCATG
CAGGGTTGTGCTTAGATTTTCCCTTGTAGTATGCAAGAAGAGTTGGTGAA
CCAACTTATGTTTTGTTAGCGAGAAAACAATTGTCTATTGGAAACTTGCT
TTTATAATTTTTCATCTAGTTAGTATCGAAGACCTGTTCTTCA
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