FC870695

Overview
NameFC870695
Unique NameFC870695
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length773
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.239e-45
Identity = 91/121 (75.21%), Postives = 101/121 (83.47%), Query Frame = 2
Query:  185 RKPRVKLGDIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 547
            RKPR+KLGD+MGILN++AIE +E  RP+P+IRTGD+VEIKLEVPEN+RRLSIYKGIVMSRQN                 VEIVFP+YSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK
Sbjct:  105 RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 225          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.370e-44
Identity = 91/122 (74.59%), Postives = 100/122 (81.97%), Query Frame = 2
Query:  182 PRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 547
            P K RVKLGDIMG+LNK+AIE +E+ RP+P +RTGD+VEIKLEVPEN+RRLSIYKGIVMSRQN                 VEIVFP+YSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK
Sbjct:  108 PWKTRVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 229          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.160e-43
Identity = 88/122 (72.13%), Postives = 100/122 (81.97%), Query Frame = 2
Query:  182 PRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 547
            PR+ RVKLGDIMGILNK+A+ A+E  RP+P IRTGD+V+I+LEVPEN+RRLS+YKGIV+SRQN                 VEIVFPLYSPNIKEIKVVSHRKVR+ARLYYLRDKLPRLSTFK
Sbjct:  112 PRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 233          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_MOOTA (50S ribosomal protein L19 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  239 IEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 547
            +E  +    IPD R GD V + ++V E NR R+ I++G+V+ R+                  VE +FPL+SP ++ I+VV H KVRRA+LYYLR+++ + +  K
Sbjct:    7 LEKEQLRTDIPDFRPGDTVRVHVKVVEGNRERIQIFEGVVIGRRGRGINETFTVRRVSYGVAVERIFPLHSPRLERIEVVRHGKVRRAKLYYLRERVGKAARIK 110          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_MAGSA (50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.634e-13
Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  209 DIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 523
            +I+  L K  IE   ++R +P    GD +++ ++V E NR R+  Y+G+ ++R+N                 VE +FPLYSPNI  I+VV    VRRA+LYYLRD+
Sbjct:    3 NIIEQLEKEQIEKLTADRGVPSFAPGDTLKVNVKVIEGNRERVQAYEGVCIARKNDGLNSSFVVRKISYGEGVERIFPLYSPNIASIEVVRRGDVRRAKLYYLRDR 108          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_CORJK (50S ribosomal protein L19 OS=Corynebacterium jeikeium (strain K411) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.639e-13
Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 2
Query:  215 MGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK*R 553
            M IL+K  ++A++    IP+ R GD +++ ++V E ++ RL +++G+V+ RQN                 VE  FP++SPNI  I V+S  KVRRA+LYYLR++  + +  K R
Sbjct:    1 MHILDK--VDAAQLRDDIPEFRAGDTLDVHVKVIEGSKSRLQVFRGVVIRRQNSGIRETFTIRKVSFGIGVERTFPVHSPNIDRIDVLSRGKVRRAKLYYLRERRGKAARIKER 112          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_ALKMQ (50S ribosomal protein L19 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.639e-13
Identity = 35/99 (35.35%), Postives = 61/99 (61.62%), Query Frame = 2
Query:  233 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKL 526
            + I+A++ ++ I D  TGD +++ + + E  R R+ +++GIV+ RQ                  VE  FP++SP I++I++V H KVRRAR++YLRD++
Sbjct:    5 KGIDAAQLKKDIIDFNTGDTIKVHVRIKEGTRERIQVFEGIVIKRQGGGIAETFTVRRISYGVGVERTFPVHSPKIEKIEIVKHGKVRRARIFYLRDRI 103          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_NOSP7 (50S ribosomal protein L19 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  233 RAIEASESERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK*R 553
            R+IEA + +  +PDI  GD V++ +++ E  + R+  Y+G+V++++N                 VE VF L+SP I  IKV+   KVRRA+LYYLRD++ + +  K R
Sbjct:    8 RSIEAEQLKSNLPDIYVGDTVKVGVKIKEGEKYRVQPYEGVVIAKRNGGINETITVRKVFQGVGVERVFLLHSPRIDSIKVLRRGKVRRAKLYYLRDRVGKATRIKQR 115          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_LACLS (50S ribosomal protein L19 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12
Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  236 AIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 517
            +I A++    IPD R GD V +  +V E  R R+ I++G+V++R+N                 VE +FP+++P +++I+V+ H KVRRA+LYYLR
Sbjct:    6 SINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEKIEVIRHGKVRRAKLYYLR 100          
BLAST of FC870695 vs. ExPASy Swiss-Prot
Match: RL19_LACLM (50S ribosomal protein L19 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12
Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  236 AIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 517
            +I A++    IPD R GD V +  +V E  R R+ I++G+V++R+N                 VE +FP+++P +++I+V+ H KVRRA+LYYLR
Sbjct:    6 SINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEKIEVIRHGKVRRAKLYYLR 100          
The following BLAST results are available for this feature:
BLAST of FC870695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RK191_ARATH1.239e-4575.2150S ribosomal protein L19-1, chloroplastic OS=Arab... [more]
RK192_ARATH1.370e-4474.5950S ribosomal protein L19-2, chloroplastic OS=Arab... [more]
RK19_SPIOL1.160e-4372.1350S ribosomal protein L19, chloroplastic OS=Spinac... [more]
RL19_MOOTA7.333e-1437.5050S ribosomal protein L19 OS=Moorella thermoacetic... [more]
RL19_MAGSA1.634e-1338.6850S ribosomal protein L19 OS=Magnetospirillum magn... [more]
RL19_CORJK3.639e-1336.8450S ribosomal protein L19 OS=Corynebacterium jeike... [more]
RL19_ALKMQ3.639e-1335.3550S ribosomal protein L19 OS=Alkaliphilus metallir... [more]
RL19_NOSP71.383e-1237.0450S ribosomal protein L19 OS=Nostoc punctiforme (s... [more]
RL19_LACLS1.383e-1237.8950S ribosomal protein L19 OS=Lactococcus lactis su... [more]
RL19_LACLM1.383e-1237.8950S ribosomal protein L19 OS=Lactococcus lactis su... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3DG11ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3DG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870695 ID=FC870695; Name=FC870695; organism=Citrus clementina; type=EST; length=773bp
GGGGGTCTCAGCGTCGCCATGGGCTCCCAGGTTCTTCCTCAGGGCGGAGT
CAAACGAAGAAGCGGAAGCGAATGAGAGTATTGAAGAGGAGCAAAACGAG
GCCGTTCAAGCACAAGGTGATGTTGTGGTAGCTGTAGAAGCTGAATCTGA
GGATAAGGTTGAAGAAGAAGAAGTGAAAGCACCCAGAAAGCCCAGGGTTA
AACTTGGAGATATCATGGGGATATTGAATAAGAGGGCGATTGAGGCATCG
GAGAGTGAAAGACCAATTCCAGATATTAGGACGGGTGATGTTGTGGAGAT
TAAATTGGAAGTTCCTGAAAATAGGCGTAGGTTGTCCATTTACAAAGGTA
TTGTTATGTCAAGGCAAAATGCTGGGATCCACACTACAATTCGAATTCGG
AGGATTATTGCTGGCATAGGGGTTGAGATCGTATTCCCTCTTTATTCGCC
AAACATCAAGGAGATAAAAGTTGTCTCCCACAGGAAAGTGAGGAGGGCAA
GGCTGTACTATCTTAGAGACAAGCTTCCTAGACTCTCCACTTTCAAATGA
AGAAGCCCGATGCTGCTGTTCTTCAGTTGATTTTGCCTTCAAAGTGGTTT
TCAGAATCCTAAAATGTTGTAAAAGCTGTAATTTAATATCCCATTTTATC
ATTTTTCCTTTCCTTTCTTTCCTTTTATTTTAGTCGTGGAAATTATTGTA
TCTTTAGATGATTACATGAGCTTTAGCAGCTTCAGATTACGATTCCATCT
AAAAAAAAAAAAAAAAAAAAAAA
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