FC870699

Overview
NameFC870699
Unique NameFC870699
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870699 vs. ExPASy Swiss-Prot
Match: RADA_STRP1 (DNA repair protein radA homolog OS=Streptococcus pyogenes serotype M1 GN=radA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.463e-20
Identity = 55/131 (41.98%), Postives = 81/131 (61.83%), Query Frame = 3
Query:   15 GIHASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNSIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 407
            G+  +R  +I++VL K+ GL LQ    +L    GV L E A DLAVA AI SS+ E P     AF+GEIGL GE+R V+R+E+R++  AKLG+ K   PK+A + +     + +E +G   + +V+N VF+
Sbjct:  325 GLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTRIEQRINEAAKLGFTKVYAPKNALQGIDIP--QGIEVVGVTTVGQVLNAVFS 453          
BLAST of FC870699 vs. ExPASy Swiss-Prot
Match: RADA_STRP3 (DNA repair protein radA homolog OS=Streptococcus pyogenes serotype M3 GN=radA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.696e-19
Identity = 54/131 (41.22%), Postives = 80/131 (61.07%), Query Frame = 3
Query:   15 GIHASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNSIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 407
            G+  +R  +I++VL K+ GL LQ    +L    GV L E A DLAVA AI SS+ E P     AF+GEIGL GE+R V+R+E+R++  AKLG+ K   PK+A + +     + +E +G   + +V+  VF+
Sbjct:  325 GLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTRIEQRINEAAKLGFTKVYAPKNALQGIDI--SQGIEVVGVTTVGQVLKAVFS 453          
BLAST of FC870699 vs. ExPASy Swiss-Prot
Match: RADA_STRP8 (DNA repair protein radA homolog OS=Streptococcus pyogenes serotype M18 GN=radA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19
Identity = 54/131 (41.22%), Postives = 80/131 (61.07%), Query Frame = 3
Query:   15 GIHASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNSIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 407
            G+  +R  +I++VL K+ GL LQ    +L    GV L E A DLAVA AI SS+ E P     AF+GEIGL GE+R V+R+E+R++  AKLG+ K   PK+A + +     + +E +G   + +V+  VF+
Sbjct:  325 GLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTRIEQRINEAAKLGFTKVYAPKNALQGIDIP--QGIEVVGVTTVGQVLKAVFS 453          
BLAST of FC870699 vs. ExPASy Swiss-Prot
Match: RADA_STRP6 (DNA repair protein radA homolog OS=Streptococcus pyogenes serotype M6 GN=radA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19
Identity = 54/131 (41.22%), Postives = 80/131 (61.07%), Query Frame = 3
Query:   15 GIHASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNSIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVVFT 407
            G+  +R  +I++VL K+ GL LQ    +L    GV L E A DLAVA AI SS+ E P     AF+GEIGL GE+R V+R+E+R++  AKLG+ K   PK+A + +     + +E +G   + +V+  VF+
Sbjct:  325 GLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIRRVTRIEQRINEAAKLGFTKVYAPKNALQGIDIP--QGIEVVGVTTVGQVLKAVFS 453          
BLAST of FC870699 vs. ExPASy Swiss-Prot
Match: RADA_ECOLI (DNA repair protein radA OS=Escherichia coli (strain K12) GN=radA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.099e-18
Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = 3
Query:   15 GIHASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNSIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINV 398
            G+  +R  ++++VL +  GL++ +  +F+NVV GV +TET+ DLA+  A+ SS  + P+P  +   GE+GL GE+R V   ++R+S  AK G+R+ IVP +     A    E M+  G K L + ++V
Sbjct:  332 GLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAP---EGMQIFGVKKLSDALSV 456          
BLAST of FC870699 vs. ExPASy Swiss-Prot
Match: RADA_MYCTU (DNA repair protein radA homolog OS=Mycobacterium tuberculosis GN=radA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.436e-18
Identity = 46/103 (44.66%), Postives = 68/103 (66.02%), Query Frame = 3
Query:    9 VNGIHASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNSIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 317
            V+GIH +RA MI +VL K A L +  N I+L+ V G+ LTE + DLAVA A+ S++   P+P +   IGE+GL G++R V+ M +R+S  A+ G+   +VP S
Sbjct:  326 VSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGFTIALVPPS 428          
BLAST of FC870699 vs. ExPASy Swiss-Prot
Match: RADA_MYCBO (DNA repair protein radA homolog OS=Mycobacterium bovis GN=radA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.436e-18
Identity = 46/103 (44.66%), Postives = 68/103 (66.02%), Query Frame = 3
Query:    9 VNGIHASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNSIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKS 317
            V+GIH +RA MI +VL K A L +  N I+L+ V G+ LTE + DLAVA A+ S++   P+P +   IGE+GL G++R V+ M +R+S  A+ G+   +VP S
Sbjct:  326 VSGIHQARAAMIAAVLEKHARLAIAVNDIYLSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEAARQGFTIALVPPS 428          
BLAST of FC870699 vs. ExPASy Swiss-Prot
Match: RADA_LISMO (DNA repair protein radA homolog OS=Listeria monocytogenes GN=radA PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 7.124e-18
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 3
Query:   15 GIHASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNSIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAE 323
            GI  ++  +I++VL K+ GL LQ    +L    GV L E A DLAVA ++ SS+ + P  ++  FIGE+GL GE+R V+R+E+RV   AKLG+++  +PK+ E
Sbjct:  328 GIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEIRRVARIEQRVQEAAKLGFKRIFIPKNNE 430          
BLAST of FC870699 vs. ExPASy Swiss-Prot
Match: RADA_LISIN (DNA repair protein radA homolog OS=Listeria innocua GN=radA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.124e-18
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 3
Query:   15 GIHASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNSIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAE 323
            GI  ++  +I++VL K+ GL LQ    +L    GV L E A DLAVA ++ SS+ + P  ++  FIGE+GL GE+R V+R+E+RV   AKLG+++  +PK+ E
Sbjct:  328 GIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEIRRVARIEQRVQEAAKLGFKRIFIPKNNE 430          
BLAST of FC870699 vs. ExPASy Swiss-Prot
Match: RADA_HAEIN (DNA repair protein radA homolog OS=Haemophilus influenzae GN=radA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.215e-17
Identity = 45/129 (34.88%), Postives = 77/129 (59.69%), Query Frame = 3
Query:   15 GIHASRADMIISVLMKQAGLKLQENAIFLNVVSGVALTETAGDLAVAAAICSSFLEFPIPNSIAFIGEIGLGGELRMVSRMEKRVSTVAKLGYRKCIVPKSAEKSLATLGFEQMEFIGCKNLKEVINVV 401
            G+  +R  ++++VL +  GL++ +  +F+NVV GV ++ET+ DLA+  A+ SSF   P+P  +   GE+GL GE+R V   ++R+S  AK G+++ IVP   +   A    E M+    K L + + V+
Sbjct:  330 GLEQNRLALLLAVLHRHGGLQMADQDVFVNVVGGVKVSETSADLALLLALISSFRNRPLPQDLVIFGEVGLAGEIRPVPSGQERISEAAKHGFKRAIVPFGNKPKSAV---ENMQVFTVKKLTDALAVL 455          
The following BLAST results are available for this feature:
BLAST of FC870699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RADA_STRP14.463e-2041.98DNA repair protein radA homolog OS=Streptococcus p... [more]
RADA_STRP31.696e-1941.22DNA repair protein radA homolog OS=Streptococcus p... [more]
RADA_STRP82.215e-1941.22DNA repair protein radA homolog OS=Streptococcus p... [more]
RADA_STRP62.215e-1941.22DNA repair protein radA homolog OS=Streptococcus p... [more]
RADA_ECOLI1.099e-1836.72DNA repair protein radA OS=Escherichia coli (strai... [more]
RADA_MYCTU1.436e-1844.66DNA repair protein radA homolog OS=Mycobacterium t... [more]
RADA_MYCBO1.436e-1844.66DNA repair protein radA homolog OS=Mycobacterium b... [more]
RADA_LISMO7.124e-1843.69DNA repair protein radA homolog OS=Listeria monocy... [more]
RADA_LISIN7.124e-1843.69DNA repair protein radA homolog OS=Listeria innocu... [more]
RADA_HAEIN1.215e-1734.88DNA repair protein radA homolog OS=Haemophilus inf... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA3DH05ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3DH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870699 ID=FC870699; Name=FC870699; organism=Citrus clementina; type=EST; length=608bp
GGGGACACGTAAATGGAATCCATGCAAGCCGAGCCGACATGATTATTTCA
GTTCTCATGAAGCAAGCTGGTCTGAAACTTCAAGAGAATGCCATTTTTTT
AAACGTGGTTAGTGGAGTGGCGCTAACAGAGACTGCTGGGGATCTTGCTG
TAGCAGCAGCTATTTGTAGCAGTTTCTTGGAGTTCCCTATTCCAAATAGC
ATTGCCTTCATTGGTGAAATTGGTCTTGGTGGTGAGCTTCGCATGGTATC
CAGAATGGAGAAAAGGGTCAGTACAGTAGCAAAACTAGGATACAGAAAAT
GTATAGTTCCCAAATCAGCAGAGAAATCTCTAGCAACTCTGGGTTTTGAG
CAGATGGAATTCATCGGCTGCAAGAACTTGAAAGAGGTCATCAACGTTGT
GTTTACAACACCCTGAAACATTGCTAGATCTTTCTCACTCCTGTGTATAG
TAGTAGTATTTGATCAATTACCAAACCCCCTTTGTATATTGTATAAGGCT
TAAATTGCTGATGAACTTTATCCATCCTTGCAACCGGGGCTGCAGCTCAG
GTGGTGGGGAGTGAGGGATTAATTTCCATAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
back to top