FC870853

Overview
NameFC870853
Unique NameFC870853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length425
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC870853 vs. ExPASy Swiss-Prot
Match: HUMS_ARATH (Alpha-humulene/(-)-(E)-beta-caryophyllene synthase OS=Arabidopsis thaliana GN=TPS21 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.752e-15
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 2 
Query:   23 VSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDTEELKDFIASLLINPVPI 211
            VS+AWKD+N+E +RP + P PLLMR+LNL+R  DV Y+Y+D YT+ + LK+ I SLLI  +PI
Sbjct:  485 VSDAWKDLNQELMRPHVFPFPLLMRVLNLSRVIDVFYRYQDAYTNPKLLKEHIVSLLIETIPI 547
[Close]
BLAST of FC870853 vs. ExPASy Swiss-Prot
Match: CASS_RICCO (Casbene synthase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.698e-15
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 2 
Query:   14 RKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDTEELKDFIASLLINPVPI 211
            +K  ++ WK+INEEC+R + V V  LMRI+NL R  DV YKY DGYTD+++LK F+  L ++P+ I
Sbjct:  536 QKMATDCWKEINEECMRQSQVSVGHLMRIVNLARLTDVSYKYGDGYTDSQQLKQFVKGLFVDPISI 601
[Close]
BLAST of FC870853 vs. ExPASy Swiss-Prot
Match: DCS3_GOSAR ((+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.233e-13
Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = 2 
Query:    5 SEFRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDT-EELKDFIASLLINPVPI 211
            +EF K + ++WKD+NEE L+PT +P P+L R LNL R  DV+Y+  DGYT   +  K  I SLLI+P+ I
Sbjct:  486 NEFNKHIESSWKDVNEEFLKPTEMPTPVLCRSLNLARVMDVLYREGDGYTHVGKAAKGGITSLLIDPIQI 555
[Close]
BLAST of FC870853 vs. ExPASy Swiss-Prot
Match: DCS2_GOSAR ((+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.951e-11
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 2 
Query:   11 FRKQVSNAWKDINEECLRPTLVPVPLLMRILNLTRAADVVYKYKDGYTDT-EELKDFIASLLINPVPI 211
            F K V +AWKD+N+E L+PT +P  +L R LNL R  DV+Y+  DGYT   +  K  I SLLI PV +
Sbjct:  487 FNKHVESAWKDVNKEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPVAL 554
The following BLAST results are available for this feature:
BLAST of FC870853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
HUMS_ARATH1.752e-1557.14Alpha-humulene/(-)-(E)-beta-caryophyllene synthase... [more]
CASS_RICCO8.698e-1551.52Casbene synthase, chloroplastic OS=Ricinus communi... [more]
DCS3_GOSAR6.233e-1350.00(+)-delta-cadinene synthase isozyme A OS=Gossypium... [more]
DCS2_GOSAR9.951e-1150.00(+)-delta-cadinene synthase isozyme XC14 OS=Gossyp... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1AB05ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1AB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870853 ID=FC870853; Name=FC870853; organism=Citrus clementina; type=EST; length=425bp
GGGCAGTGAGTTCCGGAAACAAGTTTCAAATGCATGGAAGGATATAAATG
AGGAATGCCTGCGCCCAACTCTTGTGCCAGTGCCACTTCTTATGCGAATT
CTCAATCTTACACGAGCTGCAGATGTCGTTTACAAGTATAAAGATGGCTA
CACTGACACCGAAGAGCTGAAAGATTTTATTGCTTCTCTGCTTATTAATC
CTGTGCCCATATGAGCATGATATTAACCTTATGTTTCAACACCCTGCTGG
AAAATAATTAGTCCATTGCCGTTTCAGCTTGGATGCTTTTTAAAAATAAA
TTGAAGGGTGGTGATCCCCGTTGTAATCAGACTGCACTCAAGTAGACAAG
TTATAATAAAGTTTTTATAGCTCTATTTAATTAAATTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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