FC870875

Overview
NameFC870875
Unique NameFC870875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.336e-19
Identity = 50/67 (74.63%), Postives = 53/67 (79.10%), Query Frame = 2
Query:    5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLATSKSKK 205
            GLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS           TQLA +KSKK
Sbjct:  107 GLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172          
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.336e-19
Identity = 50/67 (74.63%), Postives = 53/67 (79.10%), Query Frame = 2
Query:    5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLATSKSKK 205
            GLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS           TQLA +KSKK
Sbjct:  107 GLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172          
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.075e-19
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 2
Query:    5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 142
            GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:  107 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.477e-18
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 2
Query:    5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 142
            GLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LS
Sbjct:  107 GLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILS 152          
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.519e-18
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 2
Query:    5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 142
            GLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:  107 GLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.607e-15
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 142
            GLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:  106 GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.607e-15
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 142
            GLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:  106 GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL17_IXOSC (60S ribosomal protein L17 OS=Ixodes scapularis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.607e-15
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 142
            GLDVD L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct:  106 GLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHIEVILS 151          
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.607e-15
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 142
            GLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:  106 GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.607e-15
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 142
            GLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:  106 GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
The following BLAST results are available for this feature:
BLAST of FC870875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL172_ARATH1.336e-1974.6360S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL171_ARATH1.336e-1974.6360S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL171_HORVU5.075e-1995.6560S ribosomal protein L17-1 OS=Hordeum vulgare PE=... [more]
RL17_MAIZE1.477e-1893.4860S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL172_HORVU2.519e-1893.4860S ribosomal protein L17-2 OS=Hordeum vulgare PE=... [more]
RL17_RAT2.607e-1580.4360S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]
RL17_MOUSE2.607e-1580.4360S ribosomal protein L17 OS=Mus musculus GN=Rpl17... [more]
RL17_IXOSC2.607e-1582.6160S ribosomal protein L17 OS=Ixodes scapularis GN=... [more]
RL17_HUMAN2.607e-1580.4360S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]
RL17_FELCA2.607e-1580.4360S ribosomal protein L17 OS=Felis catus GN=RPL17 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DA09ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2DA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870875 ID=FC870875; Name=FC870875; organism=Citrus clementina; type=EST; length=621bp
GGGAGGTTTAGATGTTGATGCACTCTACATTTCTCACATCCAAGTCAACC
AGGCACAAAAGCAAAGGCGCCGCACATACCGTGCTCATGGAAGAATTAAT
CCTTACATGTCCTCTCCCTGCCATATTGAGTTGACCTTATCTGAAAAGGA
AGAGCCAGTAAAGAAAGAGCCTGAGACCCAGTTGGCAACTAGCAAATCAA
AGAAGTAATTGTCTGAGGTTTAGCATAGCAATTGGAGAGTGCCTTGATTT
TCTATTTTGTGTTCTTGATGAAGTGAGTTTTTTTACCTTTAATAGTGACT
GAGATGTTATTTAGTCAAATCAGACATCATATTTTGTTTATTTCATATTA
TGTCCAGTTTACTGTTTTGTTAGAATCCTCAGTCATACTGTTGGAGCTTT
ATGAAAATTAAAGACTTTTCAAGCTTATTTTGAAGCTTAGAGATATGGGT
GTATGAGTTGTCATTCCAAACCAAATTCCATTATCAGCTAATCGAATCTG
AATATCTTGTAATTGATTGGTTCGGTTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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