FC870875
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.336e-19 Identity = 50/67 (74.63%), Postives = 53/67 (79.10%), Query Frame = 2 Query: 5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLATSKSKK 205 GLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS TQLA +KSKK Sbjct: 107 GLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.336e-19 Identity = 50/67 (74.63%), Postives = 53/67 (79.10%), Query Frame = 2 Query: 5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLATSKSKK 205 GLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS TQLA +KSKK Sbjct: 107 GLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.075e-19 Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 2 Query: 5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 142 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS Sbjct: 107 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.477e-18 Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 2 Query: 5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 142 GLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LS Sbjct: 107 GLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILS 152
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.519e-18 Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 2 Query: 5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 142 GLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS Sbjct: 107 GLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3) HSP 1 Score: 82.0333 bits (201), Expect = 2.607e-15 Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 2 Query: 5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 142 GLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+ Sbjct: 106 GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3) HSP 1 Score: 82.0333 bits (201), Expect = 2.607e-15 Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 2 Query: 5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 142 GLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+ Sbjct: 106 GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL17_IXOSC (60S ribosomal protein L17 OS=Ixodes scapularis GN=RpL17 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.607e-15 Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 2 Query: 5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 142 GLDVD L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ LS Sbjct: 106 GLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHIEVILS 151
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3) HSP 1 Score: 82.0333 bits (201), Expect = 2.607e-15 Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 2 Query: 5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 142 GLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+ Sbjct: 106 GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151
BLAST of FC870875 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3) HSP 1 Score: 82.0333 bits (201), Expect = 2.607e-15 Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 2 Query: 5 GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 142 GLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+ Sbjct: 106 GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151 The following BLAST results are available for this feature:
BLAST of FC870875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
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Sequences
The
following sequences are available for this feature:
EST sequence >FC870875 ID=FC870875; Name=FC870875; organism=Citrus clementina; type=EST; length=621bpback to top |