FC870879

Overview
NameFC870879
Unique NameFC870879
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870879 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.208e-20
Identity = 50/104 (48.08%), Postives = 69/104 (66.35%), Query Frame = 3
Query:    6 RESTDLNLRFSVLLSGRD-CCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKLCNNVGR-SFEDGVRRLVL 311
            R STD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G PG  TL +WFK+EK G     YK   CPSVC+SC  LC+++GR S +DG  RL L
Sbjct:   99 RVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVL--GYKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLAL 197          
BLAST of FC870879 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 3
Query:    6 RESTDLNLRFSVLLSGRDCCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKLCNNVGRSFEDGVRRLVLVRDDEPAF 335
            R STDLN+ FS  +  R       +W++D YD ++G++F+T GG+ G+PG ET+ +WFK+E+     G YK+V CP+VC SC   C +VG   +   RR + + D   AF
Sbjct:  106 RVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCG-SGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSDKPFAF 212          
BLAST of FC870879 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.523e-12
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 3
Query:    9 ESTDLNLRFSVLLSGRDCCNEQPLWKVDNYDAASGKWFITTGGLDGHPGAETLLNWFKLEKIGNFPGTYKIVHCPSVCESCVKLCNNVGRSFED-GVRRLVLVRD 320
            ES DLN++F++ ++    CNE   WKVD +    G W +T GG  G+ G E+  + FK++K G  P +YK   CPS   + +  CNNV   F+   +RRL+L  D
Sbjct:   75 ESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAG-LPFSYKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLILTND 173          
The following BLAST results are available for this feature:
BLAST of FC870879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC1.208e-2048.0821 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU3.290e-1840.91Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA3.523e-1239.05Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1AD01ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1AD01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870879 ID=FC870879; Name=FC870879; organism=Citrus clementina; type=EST; length=621bp
GCGGGCGAGAATCCACTGATCTCAACTTGAGATTCTCAGTGTTGCTATCT
GGACGTGACTGTTGTAACGAACAACCATTGTGGAAAGTTGATAATTATGA
CGCTGCATCAGGCAAATGGTTTATAACAACCGGGGGACTTGATGGCCACC
CTGGAGCTGAAACTTTGCTAAATTGGTTTAAGCTTGAGAAAATTGGAAAT
TTTCCAGGTACATACAAAATCGTTCATTGTCCATCCGTTTGCGAGTCTTG
TGTCAAACTCTGCAACAACGTTGGCCGTTCGTTTGAGGATGGCGTTCGAC
GTCTGGTTCTGGTTCGTGATGATGAGCCGGCATTTCCTGTTGTGTTAATT
CCCGCTACAGAAAGATCAACGTCTGTGTAATCAATGTACCCTAACCAGCT
AGCGGTATTATTGTTCTAAATAACGGACCAGGCTAACTGCTCTTTAATCT
CTAGGATTAAAATTATGAATAAGATAGCCTGTGATCCTTTCGGGGTTAAT
AAATTCTACTGTTGGTGTATACCTTAAAATGTAATTTCTTGTTGAACATG
AAAATCGAAATCAAGTGTTCTTTGTTTTGATTCAAAAAAAATAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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