FC870880

Overview
NameFC870880
Unique NameFC870880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length313
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870880 vs. ExPASy Swiss-Prot
Match: PUB35_ARATH (U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.139e-20
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = -3
Query:    6 QVEVLCNIRHPNMVLLLGACPEFGCLIYEYMANGSLEDRLFRRGGSPVLPWQIRFRIAAEIATALLF 206
            ++E+L  IRHP++VLLLGACPE G L+YEYM NGSLEDRLF+   SP LPW  RFRIA E+A AL+F
Sbjct:  523 ELEILSKIRHPHLVLLLGACPEQGALVYEYMENGSLEDRLFQVNNSPPLPWFERFRIAWEVAAALVF 589          
BLAST of FC870880 vs. ExPASy Swiss-Prot
Match: PUB52_ARATH (U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.331e-19
Identity = 42/67 (62.69%), Postives = 54/67 (80.60%), Query Frame = -3
Query:    6 QVEVLCNIRHPNMVLLLGACPEFGCLIYEYMANGSLEDRLFRRGGSPVLPWQIRFRIAAEIATALLF 206
            ++E+L  IRHP++VLLLGACPE GCL+YEYM NGSL+DRL     +P +PW  RFRIA E+A+AL+F
Sbjct:  533 ELEILSKIRHPHLVLLLGACPERGCLVYEYMDNGSLDDRLMLVNDTPPIPWFERFRIALEVASALVF 599          
BLAST of FC870880 vs. ExPASy Swiss-Prot
Match: PUB34_ARATH (U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.421e-19
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = -3
Query:    6 QVEVLCNIRHPNMVLLLGACPEFGCLIYEYMANGSLEDRLFRRGGSPVLPWQIRFRIAAEIATALLF 206
            +VEVL  +RHP++VLLLGACPE GCL+YEY+ NGSLE+ +F R   P LPW IRFR+  E+A  L F
Sbjct:  485 EVEVLSQLRHPHVVLLLGACPENGCLVYEYLENGSLEEYIFHRKNKPPLPWFIRFRVIFEVACGLAF 551          
BLAST of FC870880 vs. ExPASy Swiss-Prot
Match: PUB53_ARATH (Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.692e-19
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = -3
Query:    6 QVEVLCNIRHPNMVLLLGACPEFGCLIYEYMANGSLEDRLFRRGGSPVLPWQIRFRIAAEIATALLF 206
            ++E+L  IRHP++VLLLGACP+ G L+YEYM NGSLEDRLF+   S  +PW +R RIA E+A+AL+F
Sbjct:  503 ELEILSKIRHPHLVLLLGACPDHGALVYEYMENGSLEDRLFQVNDSQPIPWFVRLRIAWEVASALVF 569          
BLAST of FC870880 vs. ExPASy Swiss-Prot
Match: PUB51_ARATH (U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.711e-15
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = -3
Query:    6 QVEVLCNIRHPNMVLLLGACPEFGCLIYEYMANGSLEDRLFRRGGS------PVLPWQIRFRIAAEIATALLF 206
            ++E+L  IRHP+++LLLGACPE G L+YEYM NGSLE+RL +R  +      P L W  RFRIA EIA+AL F
Sbjct:  472 ELEILSKIRHPHLLLLLGACPERGSLVYEYMHNGSLEERLMKRRPNVDTPQPPPLRWFERFRIAWEIASALYF 544          
BLAST of FC870880 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.711e-15
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = -3
Query:    6 QVEVLCNIRHPNMVLLLGACPEFGCLIYEYMANGSLEDRLFRRGGSPVLPWQIRFRIAAEIATALLF 206
            +V+VL  +RHPN++ L+GACPE   L+YEY+  GSLEDRL  +  SP L WQ R RIA EI  AL+F
Sbjct:  524 EVDVLSKMRHPNIITLIGACPEGWSLVYEYLPGGSLEDRLTCKDNSPPLSWQNRVRIATEICAALVF 590          
BLAST of FC870880 vs. ExPASy Swiss-Prot
Match: PUB32_ARATH (U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = -3
Query:    6 QVEVLCNIRHPNMVLLLGACPEFGCLIYEYMANGSLEDRLFRRGGSPVLPWQIRFRIAAEIATALLF 206
            +VE+L  +RHPN+V L+GACPE   LIY+Y+ NGSLED        P L W+ R RIA+EI +ALLF
Sbjct:  503 RVEILSRVRHPNLVTLMGACPESRSLIYQYIPNGSLEDCFSSENNVPALSWESRIRIASEICSALLF 569          
The following BLAST results are available for this feature:
BLAST of FC870880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PUB35_ARATH5.139e-2067.16U-box domain-containing protein 35 OS=Arabidopsis ... [more]
PUB52_ARATH3.331e-1962.69U-box domain-containing protein 52 OS=Arabidopsis ... [more]
PUB34_ARATH7.421e-1961.19U-box domain-containing protein 34 OS=Arabidopsis ... [more]
PUB53_ARATH9.692e-1961.19Putative U-box domain-containing protein 53 OS=Ara... [more]
PUB51_ARATH1.711e-1557.53U-box domain-containing protein 51 OS=Arabidopsis ... [more]
PUB33_ARATH1.711e-1556.72U-box domain-containing protein 33 OS=Arabidopsis ... [more]
PUB32_ARATH2.918e-1555.22U-box domain-containing protein 32 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1AD02ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1AD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870880 ID=FC870880; Name=FC870880; organism=Citrus clementina; type=EST; length=313bp
GGGGGGAAAAGGAGAGCTGTGGCAATTTCAGCAGCTATTCGGAATCTTAT
TTGCCAAGGAAGAACAGGAGAGCCACCTCGACGGAAGAGACGGTCCTCTA
AGCTCCCGTTAGCCATGTACTCATAGATTAGGCAGCCAAATTCTGGGCAA
GCTCCTAGGAGGAGAACCATGTTTGGATGCCGTATGTTGCATAATACTTC
AACCTGTATATTTTAGAATATAGAGGACATAAATAATTAAAGATAAGATG
TACTCATAAACTAATGCAACATATTATTACTTAGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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