FC870895

Overview
NameFC870895
Unique NameFC870895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length859
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870895 vs. ExPASy Swiss-Prot
Match: WDR26_DANRE (WD repeat-containing protein 26 OS=Danio rerio GN=wdr26 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.027e-14
Identity = 49/180 (27.22%), Postives = 85/180 (47.22%), Query Frame = 3
Query:  324 EFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVNLFTQQILDGHWDESLATLSKIGLVDES--VVKSASFLILEQKFFELLDAEKVMDALKTLRAEIAPLCIKNSRVRELXXXXXXXXXXXXXXXXXQDIVRAKSRXXXXXXXXXXXXXMIMIPERRLEHLVEQALVFAPKACMFHNS 857
            + +R+I + L+ LG  ++   L +ESG  L  S    F   +++G WD++   L+++  +  S   +    FL+L+QK+ E L+  KV++AL+ LR E+ PL     R+  L                  +   A SR              +M+P RRL+ L+ QA+      C++HN+
Sbjct:   54 DVIRLIGQHLHGLGLNQTVDLLMQESGCRLEHSSATKFRNHVMEGEWDKAENDLNELKALMHSPNAIVRMKFLLLQQKYLEYLEDGKVLEALQVLRGELTPLKYNTDRIHVLSGYLMCSHAEDLKAKAEWEGKGAGSRCRLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNT 233          
BLAST of FC870895 vs. ExPASy Swiss-Prot
Match: WDR26_XENTR (WD repeat-containing protein 26 OS=Xenopus tropicalis GN=wdr26 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12
Identity = 64/266 (24.06%), Postives = 104/266 (39.10%), Query Frame = 3
Query:  144 EDDEPASKRMKLSSVE-LRGLSNGSAFREPVAGSLRDLMARPLPSEGDENVIGPAGVIKRVEFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVNLFTQQILDGHWDESLATLSKIGLVDES---------------------------VVKSASFLILEQKFFELLDAEKVMDALKTLRAEIAPLCIKNSRVRELXXXXXXXXXXXXXXXXXQDIVRAKSRXXXXXXXXXXXXXMIMIPERRLEHLVEQALVFAPKACMFHNS 857
            E  EPA     LSS   L G  +     +P     + L      S+ DE+VI            R+I + L+ LG  ++   L +ESG  L       F   +++G WD++   L+++  +  S                           V++   FL+L+QK+ E L+  KV++AL+ LR E+ PL     R+  L                  +     SR              +M+P RRL+ L+ QA+      C++HN+
Sbjct:   27 ESSEPAHSNGVLSSNNGLSGTGSTGPTEQPGGRKKKRL------SQADEDVI------------RLIGQHLHGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGEWDKAENDLNELKSLVHSPHAVAACRPSSGGSGSEHSPTSCPTADVIRRMKFLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHADDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNT 274          
BLAST of FC870895 vs. ExPASy Swiss-Prot
Match: WDR26_HUMAN (WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 60/233 (25.75%), Postives = 97/233 (41.63%), Query Frame = 3
Query:  213 SAFREPVAGSLRDLMARPLPSEGDENVIGPAGVIKRVEFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVNLFTQQILDGHWDESLATLSKIGLVDES----VVKSA--------------SFLILEQKFFELLDAEKVMDALKTLRAEIAPLCIKNSRVRELXXXXXXXXXXXXXXXXXQDIVRAKSRXXXXXXXXXXXXXMIMIPERRLEHLVEQALVFAPKACMFHNS 857
            S+   P  GS   L  +   S+ DE+VI            R+I + L  LG  ++   L +ESG  L       F   +++G WD++   L+++  +  S    VV+ A               FL+L+QK+ E L+  KV++AL+ LR E+ PL     R+  L                  +     SR              +M+P RRL+ L+ QA+      C++HN+
Sbjct:  103 SSLATPELGS--SLKKKKRLSQSDEDVI------------RLIGQHLNGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGDWDKAENDLNELKPLVHSPHAIVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNT 321          
BLAST of FC870895 vs. ExPASy Swiss-Prot
Match: WDR26_MOUSE (WD repeat-containing protein 26 OS=Mus musculus GN=Wdr26 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 50/196 (25.51%), Postives = 85/196 (43.37%), Query Frame = 3
Query:  324 EFVRIIAKALYSLGYTKSGAHLEEESGIPLHSSMVNLFTQQILDGHWDESLATLSKIGLVDES----VVKSA--------------SFLILEQKFFELLDAEKVMDALKTLRAEIAPLCIKNSRVRELXXXXXXXXXXXXXXXXXQDIVRAKSRXXXXXXXXXXXXXMIMIPERRLEHLVEQALVFAPKACMFHNS 857
            + +R+I + L  LG  ++   L +ESG  L       F   +++G WD++   L+++  +  S    VV+ A               FL+L+QK+ E L+  KV++AL+ LR E+ PL     R+  L                  +     SR              +M+P RRL+ L+ QA+      C++HN+
Sbjct:  106 DVIRLIGQHLNGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGDWDKAENDLNELKPLVHSPHAIVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNT 301          
The following BLAST results are available for this feature:
BLAST of FC870895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
WDR26_DANRE1.027e-1427.22WD repeat-containing protein 26 OS=Danio rerio GN=... [more]
WDR26_XENTR3.651e-1224.06WD repeat-containing protein 26 OS=Xenopus tropica... [more]
WDR26_HUMAN1.062e-1125.75WD repeat-containing protein 26 OS=Homo sapiens GN... [more]
WDR26_MOUSE1.388e-1125.51WD repeat-containing protein 26 OS=Mus musculus GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1AE01ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1AE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870895 ID=FC870895; Name=FC870895; organism=Citrus clementina; type=EST; length=859bp
GGGAATCCAACAGCTGTTTTCGACTTAAAAAAGGAAATTACTCATTGTGA
TTCACTGGAAGCACTTTAAGTATCATATCCTTTTGTCTTGCTTCCATTGT
GATAATATATGGGCTGAGGGGTGCACATTTCATGGGAGGTGTAGAGGATG
ATGAACCAGCCTCGAAACGCATGAAATTATCATCTGTCGAACTGAGAGGT
CTTTCAAACGGTTCCGCTTTTAGAGAGCCCGTAGCTGGGTCTTTGAGAGA
TTTGATGGCTCGGCCCCTACCATCTGAAGGGGACGAAAACGTCATTGGCC
CTGCTGGAGTTATTAAACGAGTGGAATTTGTCAGAATTATTGCCAAGGCT
CTATATTCTCTTGGTTATACAAAAAGTGGTGCTCATTTAGAGGAAGAGTC
AGGGATACCTTTGCACTCTTCCATGGTAAATCTGTTTACGCAACAAATTC
TGGATGGCCATTGGGATGAAAGCTTGGCCACATTGTCTAAGATTGGTCTA
GTAGATGAAAGTGTTGTCAAATCTGCTTCTTTCCTGATATTGGAGCAGAA
ATTTTTTGAGCTTTTGGATGCAGAGAAAGTCATGGATGCATTGAAGACAT
TGAGGGCTGAAATTGCTCCTCTTTGTATAAAAAATAGTAGAGTCCGTGAA
CTTTCCTCTTGTATTGTTTCTCCTCCAAAGTGCGTAGTAGTTTGTTCTCC
AAAACAAGATATTGTGAGGGCAAAGTCCCGGCCAAAGCTGCTGGAGGAAT
TGCAGAAACTGCTTCCCCCAATGATTATGATACCTGAAAGAAGGTTGGAA
CATTTAGTTGAACAGGCCCTTGTCTTTGCACCAAAGGCTTGCATGTTTCA
CAATTCCTC
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