FC870924

Overview
NameFC870924
Unique NameFC870924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 308.531 bits (789), Expect = 2.403e-83
Identity = 151/155 (97.42%), Postives = 154/155 (99.35%), Query Frame = 1
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 468
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM+AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 308.145 bits (788), Expect = 3.138e-83
Identity = 151/155 (97.42%), Postives = 154/155 (99.35%), Query Frame = 1
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 468
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM+AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 307.76 bits (787), Expect = 4.098e-83
Identity = 151/155 (97.42%), Postives = 153/155 (98.71%), Query Frame = 1
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 468
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM+AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA KA
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGKA 181          
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 306.605 bits (784), Expect = 9.130e-83
Identity = 150/155 (96.77%), Postives = 154/155 (99.35%), Query Frame = 1
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 468
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM+AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL+WLSNNIA+KA
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASKA 181          
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 306.605 bits (784), Expect = 9.130e-83
Identity = 150/155 (96.77%), Postives = 154/155 (99.35%), Query Frame = 1
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 468
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM+AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 306.22 bits (783), Expect = 1.192e-82
Identity = 149/154 (96.75%), Postives = 153/154 (99.35%), Query Frame = 1
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 465
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM+AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN+ANK
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180          
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 3.469e-82
Identity = 149/155 (96.13%), Postives = 153/155 (98.71%), Query Frame = 1
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 468
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM+AAEI DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K+
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKS 181          
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 304.294 bits (778), Expect = 4.531e-82
Identity = 149/155 (96.13%), Postives = 153/155 (98.71%), Query Frame = 1
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 468
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EARDELHRMLNEDELRDAVLLVFANKQDLPNAM+AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI++KA
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181          
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 301.212 bits (770), Expect = 3.836e-81
Identity = 148/155 (95.48%), Postives = 152/155 (98.06%), Query Frame = 1
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 468
            AAGKTTILY+LKLGEIVTTIPTIGFNVETVEY+ ISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM+AAEITDK GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:   27 AAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of FC870924 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 5.010e-81
Identity = 147/155 (94.84%), Postives = 153/155 (98.71%), Query Frame = 1
Query:    4 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVRDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 468
            AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM+AAEITDKLGL+SLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIA K+
Sbjct:   27 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATKS 181          
The following BLAST results are available for this feature:
BLAST of FC870924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
ARF2_ORYSJ2.403e-8397.42ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ARATH3.138e-8397.42ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF2_ARATH4.098e-8397.42ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF_VIGUN9.130e-8396.77ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_ORYSJ9.130e-8396.77ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_CHLRE1.192e-8296.75ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_DAUCA3.469e-8296.13ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_SALBA4.531e-8296.13ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_CATRO3.836e-8195.48ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF_MAIZE5.010e-8194.84ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DD02ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2DD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870924 ID=FC870924; Name=FC870924; organism=Citrus clementina; type=EST; length=742bp
GGGGCTGCTGGTAAGACCACTATCTTGTACAAGCTCAAGCTTGGAGAGAT
TGTCACCACAATTCCTACCATTGGGTTTAATGTGGAGACCGTTGAATATA
AAAACATCAGTTTCACTGTGCGGGATGTTGGTGGCCAGGACAAGATTCGT
CCCTTGTGGAGGCATTATTTCCAGAACACTCAAGGTCTCATTTTTGTTGT
GGACAGCAATGACAGAGACCGTATTGTAGAAGCAAGGGATGAATTGCATA
GGATGTTGAATGAGGATGAGCTGCGAGATGCAGTGTTGCTTGTATTTGCT
AACAAACAGGATCTTCCAAATGCAATGAGTGCTGCTGAGATTACTGATAA
GCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTACATCCAGAGCACCT
GTGCAACCTCTGGTGAGGGTCTTTATGAAGGTCTGGATTGGCTCTCCAAC
AACATCGCTAACAAGGCCTGAAGCTGTTAAGATCTTTTTGCGGACTGGCA
ATTCTGGATGCAGGGGTGAATATTATCTATTTTTTTTTCTTTTTAACCCT
TTTTGTTTGAGACGTTTGGGTTGTTGTGTTGTTTTGGTCCTAGGATCTTT
ACAACTATATTGTAATAGAAGAATTGTTGGTTGGATACATGTACTCCAAG
GTTTTTGGCTCGGTTTAGATATCTGTAATTGAAACTAATTTGGTGCACCA
CTCATATTTGAAATTGTTTTTTTAAAAAAAAAAAAAAAAAAA
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