FC870937

Overview
NameFC870937
Unique NameFC870937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870937 vs. ExPASy Swiss-Prot
Match: MAF1_XENLA (Repressor of RNA polymerase III transcription MAF1 homolog OS=Xenopus laevis GN=maf1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.393e-29
Identity = 83/209 (39.71%), Postives = 110/209 (52.63%), Query Frame = 3
Query:  249 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHE----ILDYL------------GKSLDTDSSSPAEFLLSRSSRKALIYLVLTLYRMY-PDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLXRVVSF 824
            MK LE +  + +N  L  +  G+  I G +E+YSCK  G DK +      E    +L+ L            GKS   D   P   L  + SRK L YL+ TL   + PDYDFSA +AH+F  E S N       + +  A  +       +SL   L+ A+DE + L EC+IYSYNPD D DPF E G +WSFN+FFYN+KL R+V F
Sbjct:    1 MKLLENSHFEAVNSQLC-VETGDAHIIGRIESYSCKMAGDDKHMFKQFCQEGQPHVLEALSPPQTGISPSRLGKSQGADEEGP---LSDKCSRKTLFYLIATLNESFRPDYDFSAARAHEFSREPSLNWVVNAVNSSLVSALGD-----DFTSLRPNLWDAVDEEINLSECDIYSYNPDLDCDPFGEDGNLWSFNYFFYNKKLKRIVFF 200          
BLAST of FC870937 vs. ExPASy Swiss-Prot
Match: MAF1_DANRE (Repressor of RNA polymerase III transcription MAF1 homolog OS=Danio rerio GN=maf1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.125e-29
Identity = 82/206 (39.81%), Postives = 111/206 (53.88%), Query Frame = 3
Query:  249 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSLDTDSSS---PAEF----------LLSRSSRKALIYLVLTLYRMY-PDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLXRVVSF 824
            MK LE +  + IN  L  +  G+  I G +E+YSCK  G DK++      E   ++ ++L    SS   P +           L  + SRK L YL+ TL   + PDYDFS  K H F  E S N    +F       S    E Y  S L   L++ALD+ + L EC+IYSYNPD DSDP+ E+G +WSFN+FFYN++L R+V F
Sbjct:    1 MKLLENSSFEAINSLLT-IETGDCKIIGRIESYSCKMAGDDKQMFKQFCQEGQPHVLEALSPPQSSGISPNKLSHSLDDGEGPLSDKCSRKTLFYLIATLNESFRPDYDFSRTKGHDFSKEPSVNW---VFNAVNSSLSAAAGEAY--SHLQPQLWEALDKEISLAECDIYSYNPDLDSDPYGEEGNLWSFNYFFYNKRLKRIVFF 200          
BLAST of FC870937 vs. ExPASy Swiss-Prot
Match: MAF1_BOVIN (Repressor of RNA polymerase III transcription MAF1 homolog OS=Bos taurus GN=MAF1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.093e-29
Identity = 79/207 (38.16%), Postives = 111/207 (53.62%), Query Frame = 3
Query:  249 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSLD---TDSSSPAEF-----------LLSRSSRKALIYLVLTLYRMY-PDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLXRVVSF 824
            MK LE +  + IN  L  +  G+  I G +E+YSCK  G DK +      E   ++ ++L    T   SP+             L  + SRK L YL+ TL   + PDYDFS  ++H+F  E S +         +F A +E        +L   L+ A+DE + L EC+IYSYNPD DSDPF E G++WSFN+FFYN++L R+V F
Sbjct:    1 MKLLENSSFEAINSQLT-VETGDAHIIGRIESYSCKMAGDDKHMFKQFCQEGQPHVLEALSPPQTSGLSPSRLSKSQGGEDEGPLSDKCSRKTLFYLIATLNESFRPDYDFSTARSHEFSREPSLSWVVNAVNCSLFSAVRE-----DFKALKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRLKRIVFF 201          
BLAST of FC870937 vs. ExPASy Swiss-Prot
Match: MAF1_RAT (Repressor of RNA polymerase III transcription MAF1 homolog OS=Rattus norvegicus GN=Maf1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.188e-28
Identity = 79/207 (38.16%), Postives = 110/207 (53.14%), Query Frame = 3
Query:  249 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSLD---TDSSSPAEF-----------LLSRSSRKALIYLVLTLYRMY-PDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLXRVVSF 824
            MK LE +  + IN  L  +  G+  I G +E+YSCK  G DK +      E   ++ ++L    T   SP+             L  + SRK L YL+ TL   + PDYDFS  ++H+F  E S           +F A +E        +L   L+ A+DE + L EC+IYSYNPD DSDPF E G++WSFN+FFYN++L R+V F
Sbjct:    1 MKLLENSSFEAINSQLT-VETGDAHIIGRIESYSCKMAGDDKHMFKQFCQEGQPHVLEALSPPQTSGLSPSRLSKSQGGEDESPLSDKCSRKTLFYLIATLNESFRPDYDFSTARSHEFSREPSLRWVVNAVNCSLFSAVRE-----DFKALKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRLKRIVFF 201          
BLAST of FC870937 vs. ExPASy Swiss-Prot
Match: MAF1_MOUSE (Repressor of RNA polymerase III transcription MAF1 homolog OS=Mus musculus GN=Maf1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.188e-28
Identity = 79/207 (38.16%), Postives = 110/207 (53.14%), Query Frame = 3
Query:  249 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSLD---TDSSSPAEF-----------LLSRSSRKALIYLVLTLYRMY-PDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLXRVVSF 824
            MK LE +  + IN  L  +  G+  I G +E+YSCK  G DK +      E   ++ ++L    T   SP+             L  + SRK L YL+ TL   + PDYDFS  ++H+F  E S           +F A +E        +L   L+ A+DE + L EC+IYSYNPD DSDPF E G++WSFN+FFYN++L R+V F
Sbjct:    1 MKLLENSSFEAINSQLT-VETGDAHIIGRIESYSCKMAGDDKHMFKQFCQEGQPHVLEALSPPQTSGLSPSRLSKSQGGEDESPLSDKCSRKTLFYLIATLNESFRPDYDFSTARSHEFSREPSLRWVVNAVNCSLFSAVRE-----DFKALKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRLKRIVFF 201          
BLAST of FC870937 vs. ExPASy Swiss-Prot
Match: MAF1_HUMAN (Repressor of RNA polymerase III transcription MAF1 homolog OS=Homo sapiens GN=MAF1 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.188e-28
Identity = 79/207 (38.16%), Postives = 110/207 (53.14%), Query Frame = 3
Query:  249 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSLD---TDSSSPAEF-----------LLSRSSRKALIYLVLTLYRMY-PDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLXRVVSF 824
            MK LE +  + IN  L  +  G+  I G +E+YSCK  G DK +      E   ++ ++L    T   SP+             L  + SRK L YL+ TL   + PDYDFS  ++H+F  E S +         +F A +E         L   L+ A+DE + L EC+IYSYNPD DSDPF E G++WSFN+FFYN++L R+V F
Sbjct:    1 MKLLENSSFEAINSQLT-VETGDAHIIGRIESYSCKMAGDDKHMFKQFCQEGQPHVLEALSPPQTSGLSPSRLSKSQGGEEEGPLSDKCSRKTLFYLIATLNESFRPDYDFSTARSHEFSREPSLSWVVNAVNCSLFSAVRE-----DFKDLKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRLKRIVFF 201          
BLAST of FC870937 vs. ExPASy Swiss-Prot
Match: YEJC_SCHPO (Uncharacterized protein C31G5.12c OS=Schizosaccharomyces pombe GN=SPAC31G5.12c PE=2 SV=5)

HSP 1 Score: 102.449 bits (254), Expect = 3.133e-21
Identity = 60/200 (30.00%), Postives = 105/200 (52.50%), Query Frame = 3
Query:  249 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSLDTDSSSPAEFLLSR----------SSRKALIYLVLTLYRMYPDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLXRVV 818
            MKFLE   LD +N+ L   +  +  I+G  E Y+ K T +DK+L  ++E+   + L  +L +  S    F L++          SSR+  +Y+V TL   YPD+DFS+++   F+ E S +       + +    +       G   +  +++ +D  + L +C +YSY PDSDSDP+ +   IW  ++FF+N+ + R++
Sbjct:    1 MKFLELADLDTVNNALS-FDADDCRIRGKCELYTTKSTNSDKKLFKAIENRCQEDLF-ALSSSKSPEYAFSLTQQSPFGPLDQSSSRRTFMYIVATLNASYPDHDFSSLQPTDFYKEPSLSRVVDSVNSTLNNIGR-------GRLSVNGIWEIIDRHINLSDCSVYSYTPDSDSDPYGDDALIWGMSYFFFNKNMKRML 191          
BLAST of FC870937 vs. ExPASy Swiss-Prot
Match: MAF1_DICDI (Repressor of RNA polymerase III transcription OS=Dictyostelium discoideum GN=maf1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.133e-21
Identity = 67/238 (28.15%), Postives = 112/238 (47.06%), Query Frame = 3
Query:  249 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDY---------------------------------------LGKSLDTDSS------SPAEFLLSRSSRKALIYLVLTLYRMYPDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLXRVVSFR 827
            MK+++   L  +N +L+ +++G+  + G LEAYSCK  G+DK++  SL+ E+ +                                        L  S+++ S       SP   + + +SRK +IYL+  L   +PDYDF+  K  QF  E S N         +    K++   +        L+  L+  + L +CEIY Y P++  DPF E G ++SFN+FFYN+ L +++ F+
Sbjct:    1 MKYIDSLQLIGLNSYLNSIDVGDALLMGELEAYSCKMAGSDKKIYRSLDKELEELSNTNSGAMNITNSNNNTNNNNNNNSNSGSSNNNNNNNNTLSVSMNSPSPTSNISVSPFGPMSNSTSRKTMIYLIQLLNLSFPDYDFTDSKPEQFQKEPSLNLVINSINANLAGYIKDYYLEFEAK-----LWSTLESEISLQKCEIYLYKPEN-GDPFTENGVLFSFNYFFYNKSLKKIIFFK 232          
The following BLAST results are available for this feature:
BLAST of FC870937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MAF1_XENLA2.393e-2939.71Repressor of RNA polymerase III transcription MAF1... [more]
MAF1_DANRE3.125e-2939.81Repressor of RNA polymerase III transcription MAF1... [more]
MAF1_BOVIN9.093e-2938.16Repressor of RNA polymerase III transcription MAF1... [more]
MAF1_RAT1.188e-2838.16Repressor of RNA polymerase III transcription MAF1... [more]
MAF1_MOUSE1.188e-2838.16Repressor of RNA polymerase III transcription MAF1... [more]
MAF1_HUMAN1.188e-2838.16Repressor of RNA polymerase III transcription MAF1... [more]
YEJC_SCHPO3.133e-2130.00Uncharacterized protein C31G5.12c OS=Schizosacchar... [more]
MAF1_DICDI3.133e-2128.15Repressor of RNA polymerase III transcription OS=D... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA1AG08ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1AG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870937 ID=FC870937; Name=FC870937; organism=Citrus clementina; type=EST; length=829bp
GGGGGAAAAAAATCAACTAACCTTTTTTCGTTATCCCCTATCTGACGGAA
CCTGTCCGAATATTCTTTTTTAGGGTTCTTTCGGACCGCTTTCGATACCA
AATTTTTGAAACGTTAAAATCTAGCAAATCGGCGAAATCAAACTTGCGAG
AGACTTGCAATCTTTTTTCGTTTTAAGGATCTTCTGAAAGATTGTTGATC
CCTTTGTGCAATTTAAATTGAAATTTATTTTATCCATCATTGACCACCAT
GAAGTTCTTAGAATACACTCCTCTAGACCGCATCAATGATTTCTTGGATC
ATTTGAATCTTGGGGAACGTACTATCAAAGGATGCCTCGAAGCATATTCT
TGCAAACACACGGGAACTGATAAAAGACTGTCTATCAGCTTGGAACATGA
GATTCTTGATTATCTTGGGAAATCATTGGATACTGACTCTTCCTCACCAG
CTGAATTCCTTTTGAGCAGATCCAGCCGAAAGGCATTGATCTACCTGGTG
CTTACCCTCTATCGCATGTATCCGGACTATGACTTCAGTGCTGTGAAAGC
ACACCAGTTCTTCACAGAGGAAAGCTGGAACACTTTTAAGCAGATCTTTG
AGACCTACATGTTTGAAGCTTCAAAGGAATGGAGTGAGACATACGGAGGC
AGTTCCCTTCTGGAAACATTATACAAGGCTTTGGATGAGGTTGTGAAGTT
ACCTGAATGTGAAATTTACAGTTACAATCCAGATTCTGATTCAGACCCAT
TCCTTGAGAAAGGAGCAATATGGTCTTTCAATTTCTTCTTCTACAACAGA
AAACTAAANCGTGTTGTCAGTTTCCGGTT
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