FC871082

Overview
NameFC871082
Unique NameFC871082
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length868
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: UBC25_ARATH (Probable ubiquitin carrier protein E2 25 OS=Arabidopsis thaliana GN=UBC25 PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 3.652e-92
Identity = 161/249 (64.66%), Postives = 187/249 (75.10%), Query Frame = 2
Query:  122 EEPIDTPSGEDCSRNKESLDGDDVLMRFKLFKQFDAVEDHSDHYYASNVSSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKA 868
            E PI  P      RN E     D L  +  FK+FD VED SDH+YAS  ++ +Q S    KRIQ+EW+ILE DLP+ IFVR YESRMDLLRAVI+GA+GTPYHDGLFFFD+FFP  YP+ PP VHYHSGGLR+NPNLYNCGKVCLSLL TW G++ EKWIP+ STMLQVLVSIQ LILN++PYFNEPG+E       GE  S  Y+E  FILSLKTM+YT+RRPPK+F DF  GHF+  AHD+L AC A
Sbjct:  280 EPPILPPDDSRVKRNME-----DYLGLYLFFKRFDIVEDFSDHHYASKGTTSKQHSKDWAKRIQDEWRILEKDLPEMIFVRAYESRMDLLRAVIIGAQGTPYHDGLFFFDIFFPDTYPSTPPIVHYHSGGLRINPNLYNCGKVCLSLLGTWSGNQREKWIPNTSTMLQVLVSIQGLILNQKPYFNEPGYERSAGSAHGESTSKAYSENTFILSLKTMVYTMRRPPKYFEDFAYGHFFSCAHDVLKACNA 523          
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: UBC26_ARATH (Probable ubiquitin carrier protein E2 26 OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 5.457e-88
Identity = 147/219 (67.12%), Postives = 177/219 (80.82%), Query Frame = 2
Query:  212 FKQFDAVEDHSDHYYASNVSSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKA 868
            FK+FD VED SDH+YAS   S +Q S   VK++Q +WKILENDLP+ I VR  ESRMDLLRAVI+GAEGTPYHDGLFFFD+ FP  YP+VPPNVHYHSGGLR+NPNLYNCGKVCLSLL TW G   EKW+P+ STMLQ+LVSIQALILNE+PYFNEPG+        GE +S +Y+E  F+LSLKTM+Y++RRPP+HF ++V  H++ R+HDI+ AC A
Sbjct:  244 FKRFDTVEDFSDHHYASKGKSSKQHSKNWVKKVQADWKILENDLPEAISVRACESRMDLLRAVIIGAEGTPYHDGLFFFDIQFPDTYPSVPPNVHYHSGGLRINPNLYNCGKVCLSLLGTWAGSAREKWLPNESTMLQLLVSIQALILNEKPYFNEPGYVQSAGTASGESKSKVYSENVFLLSLKTMVYSIRRPPQHFEEYVQNHYFVRSHDIVKACNA 462          
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: UBC24_ARATH (Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.721e-71
Identity = 126/221 (57.01%), Postives = 159/221 (71.95%), Query Frame = 2
Query:  212 FKQFDAVEDHSDHYYASNVSSLEQP--SNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKA 868
            F+QFD V D SDH++ S+   L Q   +   VK++Q+EW  LE +LP+TI+VRV E RMDLLRA +VGA GTPYHDGLFFFD+  P  YP+ PP VHYHSGG+RLNPNLY  G+VCLSLLNTW G   E W    S++LQ+L+S QAL+LNE+PYFNE G++      EGE+ S  YNE AF+++ K+M+  +R+PPKHF   V  HF  RA  +LAACKA
Sbjct:  633 FRQFDMVNDCSDHHFLSSDKGLAQSQVTKSWVKKVQQEWSNLEANLPNTIYVRVCEERMDLLRAALVGAPGTPYHDGLFFFDIMLPPQYPHEPPMVHYHSGGMRLNPNLYESGRVCLSLLNTWSGSGTEVWNAGSSSILQLLLSFQALVLNEKPYFNEAGYDKQLGRAEGEKNSVSYNENAFLITCKSMISMLRKPPKHFEMLVKDHFTHRAQHVLAACKA 853          
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: UBC23_ARATH (Probable ubiquitin carrier protein E2 23 OS=Arabidopsis thaliana GN=UBC23 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 5.132e-70
Identity = 124/219 (56.62%), Postives = 157/219 (71.69%), Query Frame = 2
Query:  212 FKQFDAVEDHSDHYYASNVSSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHFYQRAHDILAACKA 868
            F++FD  +D  DH++   V   +    +  K++ ++WKIL+N+LPD IFVR YE RMDLLRAVIVGA GTPY DGLFFFD   PSDYP+VPP+ +YHSGG RLNPNLY  GKVCLSLLNTW G  NE W P  S++LQVLVS+Q L+LN +PYFNE G++      EGE+ S  YNE  F+L+ KTM+Y +R+PPK F + +  HF +R + IL AC A
Sbjct:  824 FRRFDISQDPLDHHFLG-VDGQKTKERQWFKKVDQDWKILQNNLPDGIFVRAYEDRMDLLRAVIVGAFGTPYQDGLFFFDFHLPSDYPSVPPSAYYHSGGWRLNPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNSLGYNENTFLLNCKTMMYLMRKPPKDFEELIKDHFRKRGYYILKACDA 1041          
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: BIRC6_HUMAN (Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.720e-41
Identity = 98/250 (39.20%), Postives = 139/250 (55.60%), Query Frame = 2
Query:  170 ESLDGDDVLMRFKL-FKQFDAVEDHSD---------HYYASNVSSLEQPSNKLVKRIQEEWKILENDLP----DTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLK-TMLYTVRRPPKHFNDFVSGHFYQRAHDILAACK 865
            +SL+   V +  KL F  F+ V +  D         HY +   ++ +  S    +R+ +E   L   LP     ++FVR  E R+D+++ +I G   TPY +G F FDV+FP DYP+ PP V+  + G   +R NPNLYN GKVCLS+LNTW G   EKW P  S+ LQVLVS+Q+LIL   PYFNEPG+E       G + S  Y+      ++K  ML  +R P   F + +  HFY +  +I+A C+
Sbjct: 4494 KSLEEKYVAVMKKLQFDTFEMVSEDEDGKLGFKVNYHYMSQVKNANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCE 4743          
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: UBE2O_MOUSE (Ubiquitin-conjugating enzyme E2 O OS=Mus musculus GN=Ube2o PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 3.244e-40
Identity = 88/204 (43.14%), Postives = 120/204 (58.82%), Query Frame = 2
Query:  221 FDAVEDHSDHYYASNVSSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSG-GLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHF 829
            F  +E    ++    +      + K    +++E  +L   LPD I V+ +E RMDL  A+I G   TPY DGL+ FD+  P+ YP VPP+  Y S    RLNPNLY+ GKVC+SLL TW G   E+W  S S++LQVL+SIQ LIL   PY+NE G++S   ++EG   S  YNE A I  +++M   VRRPP+ F   +  HF
Sbjct:  926 FSVLEFAPSNHSFKKIEFQPPEAKKFFSTVRKEMALLATSLPDGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWT-SKSSLLQVLISIQGLILVNEPYYNEAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHF 1128          
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: UBE2O_HUMAN (Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 9.439e-40
Identity = 87/204 (42.65%), Postives = 120/204 (58.82%), Query Frame = 2
Query:  221 FDAVEDHSDHYYASNVSSLEQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSG-GLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLKTMLYTVRRPPKHFNDFVSGHF 829
            F  +E    ++    +      + K    +++E  +L   LP+ I V+ +E RMDL  A+I G   TPY DGL+ FD+  P+ YP VPP+  Y S    RLNPNLY+ GKVC+SLL TW G   E+W  S S++LQVL+SIQ LIL   PY+NE G++S   ++EG   S  YNE A I  +++M   VRRPP+ F   +  HF
Sbjct:  929 FSVLEFAPSNHSFKKIEFQPPEAKKFFSTVRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWT-SKSSLLQVLISIQGLILVNEPYYNEAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHF 1131          
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: UBC3_MIMIV (Probable ubiquitin-conjugating enzyme E2 R521 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R521 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.552e-33
Identity = 85/250 (34.00%), Postives = 129/250 (51.60%), Query Frame = 2
Query:  158 SRNKESLDGDDVLMRFKLFKQFDAVEDHS-DHYYASNVSSLEQPSNKLV-----KRIQEEWKILENDLP----DTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHS---GGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNERAFILSLK-TMLYTVRRPPKHFNDFVSGHFYQRAHDILAACK 865
            S NKE +  +DV   +K+    +  ++++ D    +N+ + +     L+     K I  E      +LP     +I+ R     +     +I G E +PY  G F F ++ PS YPN  P V   +   G +R NPNLY  GKVCLS+L TW G   E WIP +S+MLQV++SIQ+L+L   PYFNEPG+ES    ++G + S  YN++     +K  M+  ++ P   F   +  HF  +A  I   C+
Sbjct: 1162 SNNKEEVISNDVKDLYKITLGNEVFQEYNLDLNKFANMLTNDTKKEGLIHKDALKAISRELLSHSKNLPVEYGSSIYYRYSPENIRYHEFIITGPEDSPYDSGCFHFRMYNPSAYPNTSPFVSMTTTGHGSVRFNPNLYADGKVCLSILGTWRGQAGESWIPGVSSMLQVMISIQSLVLISEPYFNEPGYESSRGTDKGNKLSTEYNQKVRFNCMKWAMIDVIKNPVPGFESMIKKHFSIKAPHIKQVCQ 1411          
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: UBC17_CAEEL (Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans GN=ubc-17 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.948e-25
Identity = 62/139 (44.60%), Postives = 86/139 (61.87%), Query Frame = 2
Query:  257 ASNVSSLEQPSNKLVKRIQEEWKILENDLP----DTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHY---HSGGLRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALI 652
            A N++          KRI +E   + N LP    ++I+V   E R+D+++ +I G + TPY +GLF FD+FFP+ YP  PP   +    SG +R NPNLYN GK+CLS+L TW+G   EKW P  S ++QVLVSIQ +I
Sbjct:  397 AKNINPFSPHLRDRTKRIAKELASIANALPLNASNSIYVCYDEGRVDIIKVLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCS-LMQVLVSIQEVI 534          
BLAST of FC871082 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENTR (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropicalis GN=ube2z PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.870e-20
Identity = 64/158 (40.51%), Postives = 82/158 (51.90%), Query Frame = 2
Query:  278 EQPSNKLVKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSDYPNVPPNVHYHSGG---LRLNPNLYNCGKVCLSLLNTWDGDKNEKWIPSMSTMLQVLVSIQALILNERPYFNEPGWESMDSMEEGERQSNMYNE 742
            E+ SN+ V RI+ +   +  + P  +FV      M  + A+I G   TPY  G F F    P DYP  PP V   + G   +R NPN Y  GKVCLS+L TW G     W P+ S +  VL+SIQ+L + E PY NEPG+E     E     S  YNE
Sbjct:   53 ERASNQCVLRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTG---PAWSPAQS-LSSVLISIQSL-MTENPYHNEPGFE----QERHSGDSKNYNE 201          
The following BLAST results are available for this feature:
BLAST of FC871082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
UBC25_ARATH3.652e-9264.66Probable ubiquitin carrier protein E2 25 OS=Arabid... [more]
UBC26_ARATH5.457e-8867.12Probable ubiquitin carrier protein E2 26 OS=Arabid... [more]
UBC24_ARATH2.721e-7157.01Probable ubiquitin-conjugating enzyme E2 24 OS=Ara... [more]
UBC23_ARATH5.132e-7056.62Probable ubiquitin carrier protein E2 23 OS=Arabid... [more]
BIRC6_HUMAN1.720e-4139.20Baculoviral IAP repeat-containing protein 6 OS=Hom... [more]
UBE2O_MOUSE3.244e-4043.14Ubiquitin-conjugating enzyme E2 O OS=Mus musculus ... [more]
UBE2O_HUMAN9.439e-4042.65Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens ... [more]
UBC3_MIMIV6.552e-3334.00Probable ubiquitin-conjugating enzyme E2 R521 OS=A... [more]
UBC17_CAEEL2.948e-2544.60Probable ubiquitin-conjugating enzyme protein 17 O... [more]
UBE2Z_XENTR4.870e-2040.51Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1BG10ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1BG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871082 ID=FC871082; Name=FC871082; organism=Citrus clementina; type=EST; length=868bp
GGGGGGACCATTGATGCCTTGGTGGCACGAGTCTTTGAAAGCTGAACTGA
ATCCAACTTTTGCCAACAACACTAATCATCTAAGTTTTTATGATCCATTT
GATAATGAGGATATGCCTCCTGAAGAACCGATCGATACCCCTAGTGGTGA
AGATTGCAGTAGGAATAAGGAAAGCCTAGATGGAGATGATGTTCTGATGA
GATTCAAACTTTTTAAACAGTTTGATGCTGTTGAAGATCATTCAGACCAT
TACTATGCTTCTAATGTTTCATCATTGGAGCAGCCATCAAATAAATTGGT
GAAGCGAATTCAGGAAGAGTGGAAAATCCTGGAAAATGATTTGCCAGATA
CAATTTTTGTGAGGGTTTATGAATCAAGGATGGATCTTTTGAGGGCCGTA
ATTGTAGGGGCAGAGGGAACTCCCTACCATGATGGCCTGTTCTTCTTTGA
TGTTTTCTTCCCTAGTGATTATCCTAATGTACCTCCGAATGTCCACTACC
ACTCCGGTGGCCTTCGACTCAATCCAAATTTATATAATTGTGGGAAGGTA
TGCCTTAGTCTTCTTAACACCTGGGATGGTGATAAGAATGAGAAGTGGAT
CCCTTCTATGTCAACCATGCTACAAGTTTTGGTCTCTATACAAGCACTGA
TCTTGAATGAAAGGCCTTACTTTAACGAACCTGGTTGGGAAAGTATGGAC
AGCATGGAAGAAGGTGAAAGACAGTCCAATATGTACAATGAGCGTGCATT
TATCTTGTCACTGAAGACAATGCTGTACACTGTCAGGAGACCTCCAAAGC
ATTTCAATGATTTTGTTAGTGGCCACTTTTACCAGCGTGCACATGATATT
CTGGCTGCATGTAAAGCA
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