FC871087

Overview
NameFC871087
Unique NameFC871087
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length773
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871087 vs. ExPASy Swiss-Prot
Match: PHF5_ARATH (Uncharacterized protein At1g07170/At2g30000 OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.116e-62
Identity = 106/110 (96.36%), Postives = 109/110 (99.09%), Query Frame = 1
Query:  115 MAKHHPDLIMCRKQPGIAIGRLCEKCEGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYKRNKYGFKKR 444
            MAKHHPDLIMCRKQPGIAIGRLCEKC+GKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY+R KYGFKKR
Sbjct:    1 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110          
BLAST of FC871087 vs. ExPASy Swiss-Prot
Match: PHF5A_RAT (PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.277e-58
Identity = 98/110 (89.09%), Postives = 105/110 (95.45%), Query Frame = 1
Query:  115 MAKHHPDLIMCRKQPGIAIGRLCEKCEGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYKRNKYGFKKR 444
            MAKHHPDLI CRKQ G+AIGRLCEKC+GKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY+R KYGFKKR
Sbjct:    1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110          
BLAST of FC871087 vs. ExPASy Swiss-Prot
Match: PHF5A_MOUSE (PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.277e-58
Identity = 98/110 (89.09%), Postives = 105/110 (95.45%), Query Frame = 1
Query:  115 MAKHHPDLIMCRKQPGIAIGRLCEKCEGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYKRNKYGFKKR 444
            MAKHHPDLI CRKQ G+AIGRLCEKC+GKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY+R KYGFKKR
Sbjct:    1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110          
BLAST of FC871087 vs. ExPASy Swiss-Prot
Match: PHF5A_HUMAN (PHD finger-like domain-containing protein 5A OS=Homo sapiens GN=PHF5A PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.277e-58
Identity = 98/110 (89.09%), Postives = 105/110 (95.45%), Query Frame = 1
Query:  115 MAKHHPDLIMCRKQPGIAIGRLCEKCEGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYKRNKYGFKKR 444
            MAKHHPDLI CRKQ G+AIGRLCEKC+GKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY+R KYGFKKR
Sbjct:    1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110          
BLAST of FC871087 vs. ExPASy Swiss-Prot
Match: PHF5_DROME (Uncharacterized protein CG9548 OS=Drosophila melanogaster GN=CG9548 PE=3 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.560e-56
Identity = 95/109 (87.16%), Postives = 103/109 (94.50%), Query Frame = 1
Query:  115 MAKHHPDLIMCRKQPGIAIGRLCEKCEGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYKRNKYGFKK 441
            MAKHHPDLI CRKQPG+AIGRLCEK +GKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCK CT QEKDRDGCPKIVNLGS+KTDLFY+R KYGFK+
Sbjct:    1 MAKHHPDLIFCRKQPGVAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKSCTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKQ 109          
BLAST of FC871087 vs. ExPASy Swiss-Prot
Match: INI1_SCHPO (Pre-mRNA-splicing factor ini1 OS=Schizosaccharomyces pombe GN=ini1 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.160e-43
Identity = 69/105 (65.71%), Postives = 90/105 (85.71%), Query Frame = 1
Query:  115 MAKHHPDLIMCRKQPGIAIGRLCEKCEGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYKRNKY 429
            M+KHHPDL++CR+QPGI +G+LCE+C+ KC ICDS+VRP TLVR+CDEC +GS Q RC+ICG  G+SD YYC ECT+ E DRDGCP+++NLGS++TD FY+R K+
Sbjct:    1 MSKHHPDLVLCRRQPGITVGKLCERCDEKCPICDSHVRPTTLVRICDECAFGSSQDRCIICGAPGVSDCYYCSECTRMEYDRDGCPRVINLGSSRTDWFYERKKF 105          
BLAST of FC871087 vs. ExPASy Swiss-Prot
Match: RDS3_YEAST (Pre-mRNA-splicing factor RDS3 OS=Saccharomyces cerevisiae GN=RDS3 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.870e-31
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 1
Query:  115 MAKHHPDLIMCRKQPGIAIGRLCEKCEGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICG-GVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYKRNK 426
            M++H  DLIMC KQPG+  G LCEKC+GKC ICDSYVRP   VRVC+ C++G     C+IC   VG++DA+YC EC +  KD+DGCP+I+NLGS + D  +++ K
Sbjct:    1 MSRHQFDLIMCLKQPGVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECCRLGKDKDGCPRILNLGSNRLDRHFEKKK 105          
The following BLAST results are available for this feature:
BLAST of FC871087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PHF5_ARATH1.116e-6296.36Uncharacterized protein At1g07170/At2g30000 OS=Ara... [more]
PHF5A_RAT1.277e-5889.09PHD finger-like domain-containing protein 5A OS=Ra... [more]
PHF5A_MOUSE1.277e-5889.09PHD finger-like domain-containing protein 5A OS=Mu... [more]
PHF5A_HUMAN1.277e-5889.09PHD finger-like domain-containing protein 5A OS=Ho... [more]
PHF5_DROME1.560e-5687.16Uncharacterized protein CG9548 OS=Drosophila melan... [more]
INI1_SCHPO1.160e-4365.71Pre-mRNA-splicing factor ini1 OS=Schizosaccharomyc... [more]
RDS3_YEAST3.870e-3155.24Pre-mRNA-splicing factor RDS3 OS=Saccharomyces cer... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA3AD04ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3AD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871087 ID=FC871087; Name=FC871087; organism=Citrus clementina; type=EST; length=773bp
GGGGAATCTCAACATTTTCCTCTCCAAGCAAGCGGACGTTAGCATCTGGA
CTTCGAGTCTTCTGTGCAGGTCCGAAGAACTTATAGGAGCTACCAGCTTT
TTGTCGTAGAAACCATGGCCAAGCATCATCCTGATTTGATCATGTGCAGG
AAGCAACCAGGGATAGCCATTGGAAGGCTCTGCGAGAAATGTGAGGGGAA
GTGTGTGATTTGTGATTCCTATGTGCGTCCTTGCACCCTTGTGCGAGTCT
GTGATGAATGCAATTATGGTTCCTTTCAGGGTCGATGTGTCATCTGTGGA
GGGGTGGGAATCTCTGATGCATACTACTGCAAAGAGTGCACACAGCAAGA
GAAGGACAGGGATGGTTGTCCAAAAATTGTCAATTTGGGCAGTGCGAAAA
CGGACCTGTTCTACAAACGTAACAAATATGGTTTTAAAAAAAGATGATGA
TAGCCCGCTAATTGTTTTTGTAGCAAGAGCATTTTATCTACCATTATATA
CAATTCTTGACGATGATGGATTTTGAGGTGTTTGAAGTTGGAACTAAGAT
GTGTGGCGTCTGTAACCACGAGTCATTAGAGTGACTTATTATCTTAACCT
CTATTCATTACTGAAGCACCTGCTTATATTCTAATGGGTTCGGATTGTAT
TTGAACATATCTGTAATGGAAACTTCTGCTTAAGTAACCTCATTTGTTTC
TATTAGGACTTGGTTTTCAGTTTAATAAACATGAGTGATCTCAGTAGTGG
ATCAGTTGATGGTTATGTGTACT
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