FC871091

Overview
NameFC871091
Unique NameFC871091
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC871091 vs. ExPASy Swiss-Prot
Match: UBE12_WHEAT (Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.687e-41
Identity = 75/97 (77.32%), Postives = 90/97 (92.78%), Query Frame = 3 
Query:    6 TVWDRCILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR 296
            TVWDR  +  N TLREL++WLK+KGLNAYSISCG+ LL+NSMFPRHKER+D+KVVD+AREVAK+E+P YRRHLDVVVACEDD+DND+DIPL+S+YFR
Sbjct:  955 TVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051
[Close]
BLAST of FC871091 vs. ExPASy Swiss-Prot
Match: UBE11_WHEAT (Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.687e-41
Identity = 75/97 (77.32%), Postives = 90/97 (92.78%), Query Frame = 3 
Query:    6 TVWDRCILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR 296
            TVWDR  +  N TLREL++WLK+KGLNAYSISCG+ LL+NSMFPRHKER+D+KVVD+AREVAK+E+P YRRHLDVVVACEDD+DND+DIPL+S+YFR
Sbjct:  955 TVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051
[Close]
BLAST of FC871091 vs. ExPASy Swiss-Prot
Match: UBE13_WHEAT (Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum GN=UBA3 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.321e-35
Identity = 66/97 (68.04%), Postives = 84/97 (86.60%), Query Frame = 3 
Query:    6 TVWDRCILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR 296
            TVWDR  ++ N TL EL+QW  DKGL AYSISCG+ LL+N+MF RHK+R+ KKVVD+AREVAKV++P YRRHLD+ VACED+++ND+DIPL+S+YFR
Sbjct:  957 TVWDRWSVQGNLTLAELLQWFADKGLTAYSISCGTSLLYNNMFARHKDRLTKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDENDVDIPLVSVYFR 1053
The following BLAST results are available for this feature:
BLAST of FC871091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UBE12_WHEAT4.687e-4177.32Ubiquitin-activating enzyme E1 2 OS=Triticum aesti... [more]
UBE11_WHEAT4.687e-4177.32Ubiquitin-activating enzyme E1 1 OS=Triticum aesti... [more]
UBE13_WHEAT1.321e-3568.04Ubiquitin-activating enzyme E1 3 OS=Triticum aesti... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA3AD08ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3AD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871091 ID=FC871091; Name=FC871091; organism=Citrus clementina; type=EST; length=713bp
GGGGGACTGTTTGGGACAGATGTATACTTAAAGACAATCCGACCCTAAGG
GAGCTTATCCAATGGCTCAAGGATAAGGGTTTGAATGCTTATAGCATTTC
ATGTGGAAGCTGCCTGCTCTTTAATAGTATGTTCCCTCGCCACAAAGAGC
GGATGGACAAGAAGGTTGTCGATCTGGCTAGGGAAGTGGCCAAAGTTGAA
TTGCCTCCCTATCGTCGGCACCTGGATGTTGTTGTGGCGTGCGAGGATGA
TGAGGATAATGACATCGACATTCCTCTGATATCAATTTACTTCCGTTAAA
TGTTGATTGTCAGGTCGAACTGTGATTGTAGGACGAGACCCTTAATTAAT
ATACTGGTTCCGATGTTATGTGGTTGAGTACTGCTTTCTCACGCATAAAC
GGAAAGCAACTTTGATATCATATATTCTCTCTATCTGCATATTATCAGTT
GGTTGAATGTGTGCTCGGTAGCAGGGTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAACTTTTGGCCCCCCCCGGCCCCTTTTACTTTT
AACTCGAGAAAATTTTTGTTTGGGGCCCAATTTTAAGCCCCTTGGGCAAA
TTCCCCCAATAGGGGGGCAAAAAAAAATTCTCGGGGCGTTTTTTTAAAAA
ACCTGGAAGGGAA
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