FC871943

Overview
NameFC871943
Unique NameFC871943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length946
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC871943 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.829e-40
Identity = 106/283 (37.46%), Postives = 151/283 (53.36%), Query Frame = 2 
Query:    5 YKVVHLNRTDARLANNGQPLEIQKLRCRVNFSALRFTSQIEDLGKRVIKLLRQNGPFLVLHLRYEMDMLAFSGCTQGCNKEEVEELTRMRYAYPWWKEKIINSDLKRKDGLCPLTPEETALILRALDIDPNMQIYIAAGEIYGGERRMANLAKAYPKLVRKETLLEPSDLRFFQNHSSQMAALDYLVSLESDIFVPTYDG--NMAKVVEGHRRFLGYKKTILLERKLLVDLIDQYSNGSLTWDEFSAAVKESHADRMGGPTNRLVIPDKPKEEDYFYSNPEEC 847
            +  ++L     RLA      E Q+LRCRVN+ ALRF   I  L + ++  LR  G F+ +HLR+EMDMLAF+GC    N EE + L + R      K  I N   +R  G CPLTPEE  LILRA+  D + +IY+AAGE++GGE+ M      +P+L    + ++PS+     +     +A+DY+V L SDIF+PTYDG  N A  + GHR + G++ TI  +RK L  +      G     E  A  +       GGP  R+        E ++ ++  EC
Sbjct:  200 HSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSESIVDKLRSQGHFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKENFADKRLIYNE--RRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRL-DNHSSVDPSEELSATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIAREKGKRAGFE-EAVRRVMLKTNFGGPHKRV------SPESFYTNSWPEC 472
The following BLAST results are available for this feature:
BLAST of FC871943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH4.829e-4037.46DUF246 domain-containing protein At1g04910 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2AH09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871943 ID=FC871943; Name=FC871943; organism=Citrus clementina; type=EST; length=946bp
GGGGTACAAAGTTGTACATCTCAACAGAACTGATGCTCGACTTGCCAATA
ATGGTCAGCCTTTAGAGATTCAGAAACTGCGTTGCCGTGTAAATTTTAGT
GCTTTGAGATTCACCTCTCAAATTGAAGATTTGGGTAAAAGAGTTATCAA
GCTTCTACGGCAGAATGGTCCTTTTCTTGTACTTCATCTTAGATATGAAA
TGGACATGTTGGCATTTTCTGGCTGCACTCAAGGTTGCAACAAAGAGGAG
GTGGAAGAACTCACAAGGATGAGATATGCTTATCCTTGGTGGAAAGAGAA
AATAATAAATTCTGACTTGAAGAGGAAAGATGGATTGTGCCCTTTGACAC
CTGAGGAAACAGCTCTTATATTGAGGGCCCTGGACATTGATCCTAATATG
CAGATTTACATCGCAGCTGGTGAAATATACGGTGGCGAAAGGAGGATGGC
AAATCTTGCTAAAGCTTATCCAAAATTGGTCAGAAAAGAAACGCTCTTGG
AACCATCAGACCTTAGGTTTTTCCAAAACCATTCATCCCAAATGGCAGCC
CTAGATTATCTCGTTTCATTGGAGAGTGATATATTTGTTCCTACATATGA
TGGGAACATGGCTAAAGTTGTTGAAGGCCATCGCAGGTTCCTTGGGTACA
AGAAGACAATCTTATTGGAAAGAAAGCTTTTGGTTGATCTGATTGACCAG
TATAGCAATGGATCACTGACTTGGGATGAATTTTCAGCAGCTGTTAAGGA
ATCTCATGCGGATCGCATGGGAGGGCCAACAAATAGATTGGTGATCCCAG
ACAAGCCAAAAGAAGAGGATTACTTCTATTCCAACCCAGAAGAATGTTTG
CAAACGTCATCATTCGATCCGTTGAGTAGTACGTGATTACTGTAATCTAC
ACAAGATTTGTGGCATTTTTACCAGTGTTTTCCTAGAGTGCCGACT
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