FC871952

Overview
NameFC871952
Unique NameFC871952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: RBX1A_ARATH (RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.082e-57
Identity = 100/118 (84.75%), Postives = 101/118 (85.59%), Query Frame = 2
Query:   95 MATLDSDVPMVPVGEXXXXXXXXXXXXXXXRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 448
            MATLDSDV M+P GE               RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct:    1 MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118          
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: RBX1_SALSA (RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.882e-50
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 2
Query:  185 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 448
            RFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct:   21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108          
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: RBX1_MOUSE (RING-box protein 1 OS=Mus musculus GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.882e-50
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 2
Query:  185 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 448
            RFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct:   21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108          
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: RBX1_HUMAN (RING-box protein 1 OS=Homo sapiens GN=RBX1 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.882e-50
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 2
Query:  185 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 448
            RFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct:   21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108          
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: RBX1B_ARATH (RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.764e-50
Identity = 93/118 (78.81%), Postives = 96/118 (81.36%), Query Frame = 2
Query:   95 MATLDSDVPMVPVGEXXXXXXXXXXXXXXXRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 448
            MA+L+SDV M   GE               RFE+KKWSAVALWAWDIVVDNCAICRNHIMDLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct:    1 MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIMDLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115          
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: RBX1A_DROME (RING-box protein 1A OS=Drosophila melanogaster GN=Roc1a PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.420e-50
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 2
Query:  185 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 448
            RFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EW+FQKYGH
Sbjct:   21 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWDFQKYGH 108          
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: RBX1_CAEEL (RING-box protein 1 OS=Caenorhabditis elegans GN=rbx-1 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.677e-47
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 2
Query:  185 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 448
            RFE+KKWSAVALWAWDI VDNCAICRNHIMDLCIECQANQA+   +ECTVAWG CNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct:   23 RFEVKKWSAVALWAWDIQVDNCAICRNHIMDLCIECQANQAAGLKDECTVAWGNCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 110          
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: RBX1_DICDI (RING-box protein 1 OS=Dictyostelium discoideum GN=rbx1 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.933e-46
Identity = 77/87 (88.51%), Postives = 84/87 (96.55%), Query Frame = 2
Query:  185 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 445
            +FE+K+W+AVALW WDIVVDNCAICRNHIMDLCIECQANQAS TSEECTVAWG+CNHAFHFHCISRWLK+RQVCPLDN +WEFQKYG
Sbjct:   17 KFEVKRWNAVALWIWDIVVDNCAICRNHIMDLCIECQANQASNTSEECTVAWGICNHAFHFHCISRWLKSRQVCPLDNRDWEFQKYG 103          
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: RBX1_SCHPO (RING-box protein pip1 OS=Schizosaccharomyces pombe GN=pip1 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.645e-45
Identity = 76/88 (86.36%), Postives = 80/88 (90.91%), Query Frame = 2
Query:  185 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 448
            RFEIKKW+AVALW WDIVVDNCAICRNHIMDLCIECQAN  SA ++ECTVAWG CNHAFHFHCISRWL TR VCPLDN EWEFQ+YGH
Sbjct:   20 RFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIECQANTDSAAAQECTVAWGTCNHAFHFHCISRWLNTRNVCPLDNREWEFQRYGH 107          
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: RBX1B_DROME (RING-box protein 1B OS=Drosophila melanogaster GN=Roc1b PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.142e-37
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 2
Query:  185 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 445
            RF +KKW A A+W WD+ VDNCAICRNHIM+LCIECQA+  +A  +ECTVAWG CNHAFH+HCI+RWLKTR VCPLDN EW +QKYG
Sbjct:   36 RFVVKKWVAHAMWGWDVAVDNCAICRNHIMNLCIECQADP-NANQDECTVAWGECNHAFHYHCIARWLKTRLVCPLDNKEWVYQKYG 121          
The following BLAST results are available for this feature:
BLAST of FC871952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RBX1A_ARATH7.082e-5784.75RING-box protein 1a OS=Arabidopsis thaliana GN=RBX... [more]
RBX1_SALSA2.882e-5096.59RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=... [more]
RBX1_MOUSE2.882e-5096.59RING-box protein 1 OS=Mus musculus GN=Rbx1 PE=1 SV... [more]
RBX1_HUMAN2.882e-5096.59RING-box protein 1 OS=Homo sapiens GN=RBX1 PE=1 SV... [more]
RBX1B_ARATH3.764e-5078.81RING-box protein 1b OS=Arabidopsis thaliana GN=RBX... [more]
RBX1A_DROME6.420e-5095.45RING-box protein 1A OS=Drosophila melanogaster GN=... [more]
RBX1_CAEEL8.677e-4789.77RING-box protein 1 OS=Caenorhabditis elegans GN=rb... [more]
RBX1_DICDI1.933e-4688.51RING-box protein 1 OS=Dictyostelium discoideum GN=... [more]
RBX1_SCHPO3.645e-4586.36RING-box protein pip1 OS=Schizosaccharomyces pombe... [more]
RBX1B_DROME2.142e-3773.56RING-box protein 1B OS=Drosophila melanogaster GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DF09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871952 ID=FC871952; Name=FC871952; organism=Citrus clementina; type=EST; length=667bp
GGGGGGGAATCATTCGTTTGTTTTGCCATCTTTTCTTTCTGTAGAGACCT
AAACAAGCGTTCGTTGTTGGGTTTCCACAAGAATCGAGAAAAAAATGGCG
ACCTTGGACTCAGACGTACCGATGGTTCCAGTCGGAGAGGCATCAAGCAG
TGCAGGCCCTTCATCTTCCTCCAAGAAGCCTAAACGTTTCGAGATCAAAA
AGTGGAGCGCCGTCGCCCTCTGGGCTTGGGATATTGTTGTCGATAATTGT
GCGATTTGCAGGAACCACATCATGGATCTCTGCATCGAGTGCCAGGCTAA
CCAAGCTAGCGCTACAAGCGAGGAATGCACTGTAGCTTGGGGGGTTTGCA
ACCATGCATTTCACTTTCACTGCATCAGTCGATGGCTGAAGACTCGTCAA
GTTTGTCCATTGGATAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTA
GAGCCTTTGAGCCAGTTGAGTTTTGGATTCTGTCTGCTATGTATTGCAGA
TTTCAAGTAGATATTATGGAAGACCCTGGACTTTCTGTCAATTCTATTTG
ATGCTCTTTGTTATCTAAAATTCAGTTGGTTATGACTTGGATTCTAAATC
CTATATATGTTTGTGAAAATTAAGCCATAATTTCTGTTTAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
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