FC871967

Overview
NameFC871967
Unique NameFC871967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871967 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.123e-69
Identity = 121/136 (88.97%), Postives = 130/136 (95.59%), Query Frame = 2
Query:    5 KSEATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 412
            KSEA  YE VYGEPI VKELA RVASYVHLCTLYWWL+PFGCGVILGGYDRDGPQLYMIEPSG+SY+YFGAA+GKGRQAAKTEIEKLKLSE+TCR G++EVAKIIYGVHDEAKDKAFELE+SW+CDESNRQHQKVP
Sbjct:   93 KSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKAFELELSWICDESNRQHQKVP 228          
BLAST of FC871967 vs. ExPASy Swiss-Prot
Match: PSA3_SPIOL (Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.467e-69
Identity = 123/136 (90.44%), Postives = 130/136 (95.59%), Query Frame = 2
Query:    5 KSEATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 412
            KSEAT YESVYGE +PVKELA RVASYVHLCTLYWWL+PFGCGVILGGYDRDGPQLYM+EPSGISYRYFGAAIGKG+QAAKTEIEKLKLSEMTCR G+IEVAKIIY VHDEAKDKAFELEMSW+CDES R+HQKVP
Sbjct:   93 KSEATNYESVYGEAVPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMVEPSGISYRYFGAAIGKGKQAAKTEIEKLKLSEMTCREGIIEVAKIIYKVHDEAKDKAFELEMSWICDESKREHQKVP 228          
BLAST of FC871967 vs. ExPASy Swiss-Prot
Match: PSA3_ARATH (Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 5.218e-67
Identity = 118/136 (86.76%), Postives = 129/136 (94.85%), Query Frame = 2
Query:    5 KSEATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 412
            KSEA  YESVYG+ +PVKEL++RVASYVHLCTLYWWL+PFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKG+QAAKTEIEKL LSEMTC+ GVIEVAKIIY +HDEAKDKAFELEMSW+C+ES R+HQKVP
Sbjct:   93 KSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKLNLSEMTCKEGVIEVAKIIYKLHDEAKDKAFELEMSWICEESKREHQKVP 228          
BLAST of FC871967 vs. ExPASy Swiss-Prot
Match: PSA3_DICDI (Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 4.023e-43
Identity = 79/136 (58.09%), Postives = 105/136 (77.21%), Query Frame = 2
Query:    5 KSEATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 412
            +SEA  Y+S YG+PIP+K L+QR+ASY H+ TLY  ++PFGC + + G D+ GPQL+++EPSG    YFGA++GKG+QAAK E+EK+K SEMTCR  + EV++IIY VHDE KDK FELE+ W+  E+N  HQ VP
Sbjct:   93 RSEAKNYKSTYGQPIPIKVLSQRIASYNHMHTLYGSVRPFGCSIAITGIDQYGPQLFLVEPSGSCVGYFGASLGKGKQAAKNELEKIKFSEMTCREAIKEVSRIIYSVHDEVKDKDFELELGWISTETNNVHQIVP 228          
BLAST of FC871967 vs. ExPASy Swiss-Prot
Match: PSA3_ACACA (Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba castellanii PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.863e-43
Identity = 86/137 (62.77%), Postives = 106/137 (77.37%), Query Frame = 2
Query:    2 GKSEATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 412
            G++EAT Y   YG  I  K L +R++++V L +LY  ++PFG  VILG  D++GPQLYMIEPSGIS+ YFG AIGKG +AAKTEIEKLKLSEMT R  + E AKIIY VHD+AKDKAFELE+SWVC+E+   H+ VP
Sbjct:   90 GRAEATSYREFYGTDISGKVLNERLSNFVQLYSLYGSVRPFGTSVILGCVDKNGPQLYMIEPSGISWGYFGVAIGKGARAAKTEIEKLKLSEMTAREAIKEAAKIIYSVHDDAKDKAFELELSWVCEETGNLHKFVP 226          
BLAST of FC871967 vs. ExPASy Swiss-Prot
Match: PSA3_BOVIN (Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 2.883e-41
Identity = 86/137 (62.77%), Postives = 104/137 (75.91%), Query Frame = 2
Query:    5 KSEATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 412
            + EA+ + S +G  IP+K LA RVA YVH  TLY  ++PFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL++ EMTCR  V EVAKIIY VHDE KDKAFELE+SWV + +N +H+ VP
Sbjct:   93 REEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGEITNGRHEIVP 229          
BLAST of FC871967 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.766e-41
Identity = 86/137 (62.77%), Postives = 104/137 (75.91%), Query Frame = 2
Query:    5 KSEATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 412
            + EA+ + S +G  IP+K LA RVA YVH  TLY  ++PFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL++ EMTCR  V EVAKIIY VHDE KDKAFELE+SWV + +N +H+ VP
Sbjct:   93 REEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVP 229          
BLAST of FC871967 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.431e-40
Identity = 85/137 (62.04%), Postives = 103/137 (75.18%), Query Frame = 2
Query:    5 KSEATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 412
            + EA+ + S +G  IP+K LA RVA YVH  TLY  ++PFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL++ EMTCR  V EVAKIIY VHDE KDKAFELE+SWV + +  +H+ VP
Sbjct:   93 REEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEIVP 229          
BLAST of FC871967 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.431e-40
Identity = 85/137 (62.04%), Postives = 103/137 (75.18%), Query Frame = 2
Query:    5 KSEATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 412
            + EA+ + S +G  IP+K LA RVA YVH  TLY  ++PFGC  +LG Y   DG QLYMI+PSG+SY Y+G AIGK RQAAKTEIEKL++ EMTCR  V EVAKIIY VHDE KDKAFELE+SWV + +  +H+ VP
Sbjct:   93 REEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEIVP 229          
BLAST of FC871967 vs. ExPASy Swiss-Prot
Match: PSA3_SCHPO (Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces pombe GN=SPCC1795.04c PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.640e-29
Identity = 62/136 (45.59%), Postives = 85/136 (62.50%), Query Frame = 2
Query:    5 KSEATFYESVYGEPIPVKELAQRVASYVHLCTLYWWLKPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCR*GVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 412
            + EAT +   YG PIP   +A R+ +YV L T Y  ++PFG    +  YD +GP LYM+EP+G+ + Y GAA GKGRQ A+ E+EKL  S +  +  V E A+I+Y  HDE  +K  E+EM+WV  E+N  H  VP
Sbjct:   92 RDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKMKDAVKEAARILYATHDEENNKEHEIEMTWVGVETNGIHTPVP 227          
The following BLAST results are available for this feature:
BLAST of FC871967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSA3_ORYSJ1.123e-6988.97Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]
PSA3_SPIOL1.467e-6990.44Proteasome subunit alpha type-3 OS=Spinacia olerac... [more]
PSA3_ARATH5.218e-6786.76Proteasome subunit alpha type-3 OS=Arabidopsis tha... [more]
PSA3_DICDI4.023e-4358.09Proteasome subunit alpha type-3 OS=Dictyostelium d... [more]
PSA3_ACACA6.863e-4362.77Proteasome subunit alpha type-3 (Fragment) OS=Acan... [more]
PSA3_BOVIN2.883e-4162.77Proteasome subunit alpha type-3 OS=Bos taurus GN=P... [more]
PSA3_HUMAN3.766e-4162.77Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]
PSA3_RAT1.431e-4062.04Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]
PSA3_MOUSE1.431e-4062.04Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]
PSA3_SCHPO5.640e-2945.59Probable proteasome subunit alpha type-3 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DH05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871967 ID=FC871967; Name=FC871967; organism=Citrus clementina; type=EST; length=860bp
GGGCAAGTCTGAAGCTACATTTTATGAAAGTGTATATGGCGAACCAATTC
CTGTTAAAGAACTTGCTCAACGAGTTGCTAGCTATGTGCATCTATGTACT
CTATATTGGTGGCTCAAACCTTTTGGATGTGGTGTAATTCTTGGAGGTTA
TGACAGAGATGGACCGCAATTGTATATGATTGAACCTTCTGGTATCTCCT
ATAGGTATTTTGGAGCTGCAATTGGAAAGGGCAGGCAGGCTGCTAAAACA
GAGATTGAAAAGTTGAAGCTTTCTGAAATGACCTGCCGATAAGGGGTCAT
TGAAGTAGCCAAGATCATTTATGGAGTGCACGATGAGGCTAAGGACAAGG
CCTTTGAACTGGAAATGAGCTGGGTCTGTGATGAATCAAACCGCCAGCAT
CAGAAGGTACCAGATGAGCTTCTTGAGGAAGCTAAGGCAGCCGCCAGAGC
AGCGTTGGAAGAGATGGATGCAGATTAGTGTAGCAGAGTTGATAATATTT
GTTTACTAGTTTGATGCCATTTCAGGGCTTGTCTTGGAATACTTGTCGCA
ACATTTTCAAAATATTTAATAGATTGGTGGATTCTCTTGATGGTTGATGT
CTTTACCGCTGATAATTGCATCTATACTGTTAAAGTTTTTAAATTATCAT
TTGCTGGTCTATGAGCTAGCGCCAAATTTTTTGGTGTTGAAACTTGAATT
TATGCTTTTGCTTAATGTGTTGGCATCTGGTCTAAAATTTAGATAGCACG
AAATGTATGGTTAGGAATGGGAAGAAAGGTTAGTCTGTTTATATCTCTCA
TTTATTTTTATTTTTACCACGTATATTTACCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
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