FC871984

Overview
NameFC871984
Unique NameFC871984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871984 vs. ExPASy Swiss-Prot
Match: GLR36_ARATH (Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.004e-23
Identity = 50/114 (43.86%), Postives = 66/114 (57.89%), Query Frame = 2
Query:   71 ELSENGDLQRIHDKWLTRSACSSQGAKQEADRLHLKSFWXXXXXXXXXXXXXXXIYLIQIVRQFARHYLDLQERESAGPSSQSSRLQTFISFAGEKEVVIK-NLSKKRKLERAS 409
            +LSENGD+QRI DKWL R ACS QGA+ E DRL LKSFW               +Y + ++RQF +   +  E      SS S+R+ +F+SF  EKE   K   S++R+LE  S
Sbjct:  782 QLSENGDMQRIRDKWLLRKACSLQGAEIEVDRLELKSFWGLFVVCGVACVLALAVYTVLMIRQFGQQCPEEAEGSIRRRSSPSARIHSFLSFVKEKEEDAKARSSRERQLEDIS 895          

HSP 2 Score: 41.9726 bits (97), Expect = 1.004e-23
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 3
Query:    9 GWGFAFPRDSPLAVDMSIAIL 71
            GWGFAFPR+SPLAVD+S AIL
Sbjct:  761 GWGFAFPRNSPLAVDVSAAIL 781          
BLAST of FC871984 vs. ExPASy Swiss-Prot
Match: GLR32_ARATH (Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.492e-20
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 2
Query:   74 LSENGDLQRIHDKWLTRSACSSQG---AKQEADRLHLKSFWXXXXXXXXXXXXXXXIYLIQIVRQFARHYLDLQERESAGPSSQSSR---LQTFISFAGEKEVVIKNLSKKRK 394
            LSE G LQ+IHDKWL+RS CS+     + +++++L L+SFW               IY  +IVR F RH     + E+  PS +SSR   LQTF+++  EKE   K   K+++
Sbjct:  790 LSETGQLQKIHDKWLSRSNCSNLNGSVSDEDSEQLKLRSFWGLFLVCGISCFIALFIYFFKIVRDFFRH--GKYDEEATVPSPESSRSKSLQTFLAYFDEKEDESKRRMKRKR 900          

HSP 2 Score: 45.0542 bits (105), Expect = 3.492e-20
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 3
Query:    9 GWGFAFPRDSPLAVDMSIAIL 71
            GWGFAFPRDSPLA+DMS AIL
Sbjct:  768 GWGFAFPRDSPLAIDMSTAIL 788          
BLAST of FC871984 vs. ExPASy Swiss-Prot
Match: GLR33_ARATH (Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.593e-19
Identity = 56/140 (40.00%), Postives = 77/140 (55.00%), Query Frame = 2
Query:   71 ELSENGDLQRIHDKWLTRSACSSQGAKQEADRLHLKSFWXXXXXXXXXXXXXXXIYLIQIVRQFARHYLD-----LQERESAGPSSQSSRLQTFISFAGEKEVVIKNLSKKRKLERASTGDIDKDKSTDGDLNGSVNPGN 475
            EL+ENGDLQRIHDKWL ++AC+ + A+ E+DRLHLKSFW               +Y +QI+RQ  +   D      Q++     S +S+RLQ F+S   EKE   K+ SKKRK++ +        +S   D   S N  N
Sbjct:  792 ELAENGDLQRIHDKWLMKNACTLENAELESDRLHLKSFWGLFLICGVACLLALFLYFVQIIRQLYKKPTDDAIARDQQQNHDSSSMRSTRLQRFLSLMDEKE-ESKHESKKRKIDGSMNDTSGSTRSRGFDRERSFNSVN 930          
BLAST of FC871984 vs. ExPASy Swiss-Prot
Match: GLR34_ARATH (Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 3.074e-13
Identity = 38/124 (30.65%), Postives = 56/124 (45.16%), Query Frame = 2
Query:   71 ELSENGDLQRIHDKWLT-RSACSSQGAKQEADRLHLKSFWXXXXXXXXXXXXXXXIYLIQIVRQFARHYLDLQERESAGPSSQSSRLQTFISFAGEKEVVIKNLSKKRKLERASTGDIDKDKST 439
            +LSE G+L++IH KWL  +  CS Q +  E  +L LKSFW               ++  ++  Q+ R   +  + E AG  S+ SR     S  G +    K L K      A   +I K KS+
Sbjct:  820 QLSEEGELEKIHRKWLNYKHECSMQISNSEDSQLSLKSFWGLFLICGITCFMALTVFFWRVFWQYQRLLPESADEERAGEVSEPSR-----SGRGSRAPSFKELIKVVDKREAEIKEILKQKSS 938          

HSP 2 Score: 42.3578 bits (98), Expect = 3.074e-13
Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = 3
Query:    9 GWGFAFPRDSPLAVDMSIAIL 71
            GWGFAF RDSPLAVDMS AIL
Sbjct:  799 GWGFAFQRDSPLAVDMSTAIL 819          
BLAST of FC871984 vs. ExPASy Swiss-Prot
Match: GLR37_ARATH (Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2)

HSP 1 Score: 50.0618 bits (118), Expect = 5.443e-12
Identity = 34/116 (29.31%), Postives = 55/116 (47.41%), Query Frame = 2
Query:   71 ELSENGDLQRIHDKWLTRSACSSQGA-KQEADRLHLKSFWXXXXXXXXXXXXXXXIYLIQIVRQFARHYLDLQERESAGPSSQSSRLQT---------FISFAGEKEVVIKNLSKK 388
            +LSE   LQ I  KWL ++ C+ +     E ++LHLKSF                +++++++RQF R+     ER S+ P +  S   T         F+ F  EKE  IK + ++
Sbjct:  785 KLSETRKLQEIRKKWLCKTNCAGKSNWNPEPNQLHLKSFKGLYLVCIAITVSAFLVFVLRMIRQFVRY--RRMERTSSMPRASWSASPTLRLRELVFDFVEFVDEKEEAIKRMFRR 898          

HSP 2 Score: 41.9726 bits (97), Expect = 5.443e-12
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 3
Query:    9 GWGFAFPRDSPLAVDMSIAIL 71
            GWGFAF RDSPLA+DMS AIL
Sbjct:  764 GWGFAFKRDSPLAIDMSTAIL 784          
BLAST of FC871984 vs. ExPASy Swiss-Prot
Match: GLR31_ARATH (Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = 2
Query:   74 LSENGDLQRIHDKWLTRSACSSQGAKQEAD--RLHLKSFWXXXXXXXXXXXXXXXIYLIQIVRQFARHYLDLQERESAGPSSQSSRL---QTFISFAGEKEVVIKNLSKKRK 394
            LSE G+LQ+IHD+WL++S CSS    Q  D  +L++ SFW               I+  +I+R F +   ++   E+  PS +SSRL   QTF++F  EKE   K   K+++
Sbjct:  790 LSETGELQKIHDRWLSKSNCSSPHGSQSGDSEQLNVHSFWGMFLVVGIACLVALFIHFFKIIRDFCKDTPEVVVEEAI-PSPKSSRLTKLQTFLAFVDEKEEETKRRLKRKR 900          
The following BLAST results are available for this feature:
BLAST of FC871984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GLR36_ARATH1.004e-2343.86Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=... [more]
GLR32_ARATH3.492e-2038.94Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=... [more]
GLR33_ARATH3.593e-1940.00Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=... [more]
GLR34_ARATH3.074e-1330.65Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=... [more]
GLR37_ARATH5.443e-1229.31Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=... [more]
GLR31_ARATH1.617e-1136.61Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2BA11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2BA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871984 ID=FC871984; Name=FC871984; organism=Citrus clementina; type=EST; length=684bp
GGGGAATTGGGTGGGGATTTGCATTTCCAAGGGACTCACCTCTTGCAGTT
GACATGTCAATTGCCATCCTGAACTATCAGAGAATGGAGATCTGCAAAGA
ATTCATGACAAGTGGCTCACAAGAAGCGCTTGCAGTTCACAAGGCGCAAA
GCAAGAAGCAGACCGGCTTCATCTTAAAAGCTTTTGGGGCCTCTTTGTTT
TGTGTGGTGTAGCTTGCTTGCTTGCTCTCTTAATATATCTCATACAGATT
GTACGCCAGTTTGCCAGGCATTATCTGGACTTGCAAGAGCGTGAGTCTGC
AGGTCCAAGCTCACAAAGTTCACGTCTTCAAACATTTATTTCATTTGCCG
GCGAGAAGGAAGTCGTAATAAAAAATCTCTCCAAGAAAAGAAAATTGGAG
AGGGCGTCAACTGGAGACATAGATAAAGATAAATCCACGGACGGGGACTT
AAATGGGAGTGTTAATCCTGGTAATGAAGCCAAATTAGTTGCATTTGAGG
TCTTTGGTCATAATTCGCATTTTTATTAGATATGTCAATGTTAGGATAGT
ACTTGTCTTTATAGTTGCAAATGGAATTGTGTTAGCACTCTGCAAGTGTA
ATTGTAGGCAAACAAAATCTACAGCTGCCAATAAATCTCATGGCAATTTA
GTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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