FC871985

Overview
NameFC871985
Unique NameFC871985
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871985 vs. ExPASy Swiss-Prot
Match: MCA4_ARATH (Metacaspase-4 OS=Arabidopsis thaliana GN=AMC4 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.292e-35
Identity = 69/101 (68.32%), Postives = 86/101 (85.15%), Query Frame = 2
Query:    5 GSKKDVYAGGSKRS--LPDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 301
            GSK++VYAGGS+ S  LPD GIL+SGCQTDQTSADA+P+GK +EAYGA+SN+IQ I+ E+DG ++NRE+V   R+ LKKQGFTQQPGLYCHD + + PFIC
Sbjct:  318 GSKEEVYAGGSRGSVPLPDSGILISGCQTDQTSADATPAGKPTEAYGAMSNSIQTILEETDGEISNREMVTRARKALKKQGFTQQPGLYCHDGYANAPFIC 418          
BLAST of FC871985 vs. ExPASy Swiss-Prot
Match: MCA5_ARATH (Metacaspase-5 OS=Arabidopsis thaliana GN=AMC5 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.132e-31
Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 2
Query:    5 GSKKDVYAGGSKRSLPDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 301
            G+K++VYAG S  SL D GIL+SGCQTDQTSADASP G    AYGA +NA+QII+ E+ G +T +ELVL  R++LKKQGF+Q+PGLYC D+ V+ PFIC
Sbjct:  312 GNKQEVYAGASNGSLADNGILISGCQTDQTSADASPQGHPEMAYGAFTNAVQIILEETKGMITYKELVLKARKLLKKQGFSQRPGLYCSDSFVNAPFIC 410          
BLAST of FC871985 vs. ExPASy Swiss-Prot
Match: MCA6_ARATH (Metacaspase-6 OS=Arabidopsis thaliana GN=AMC6 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.060e-29
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 2
Query:   14 KDVYAGGSKRSLPDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 301
            +DVYAG    +LPD GIL+SGCQTDQTS+DASP G    AYGAL+NAIQIII E+ G ++N++LVL  R++L+KQGF Q+PGLYC+D +V+  FIC
Sbjct:  273 QDVYAGAINGALPDNGILISGCQTDQTSSDASPPGHPELAYGALTNAIQIIIGETKGKISNKDLVLKARKLLRKQGFDQRPGLYCNDAYVNARFIC 368          
BLAST of FC871985 vs. ExPASy Swiss-Prot
Match: MCA7_ARATH (Metacaspase-7 OS=Arabidopsis thaliana GN=AMC7 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.135e-23
Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = 2
Query:    8 SKKDVYAGGSKRSL-PDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESD--GAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 301
            S +++Y G S   L PD GIL+SGCQTD+TSAD    G   EA+GA SNAIQ++++E+D    +TN+E+VL  R++LKKQ F Q+PGLYC+D  V+ PFIC
Sbjct:  306 SDREIYGGRSSNGLFPDRGILLSGCQTDETSADVKKKG---EAFGAFSNAIQMVLSETDHKDKITNKEMVLRAREILKKQMFIQRPGLYCNDRFVNAPFIC 403          
BLAST of FC871985 vs. ExPASy Swiss-Prot
Match: MCA8_ARATH (Metacaspase-8 OS=Arabidopsis thaliana GN=AMC8 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.612e-20
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 2
Query:    2 GGSKKDVYAGGSKR--SLPDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIA---ESDGAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 301
            G  + D    G+ R  ++ D GIL+SGCQTDQ S D   + +  +AYGA S+AIQ+I++   +    +TN+ELV   R  LKK+G++Q+PGLYCHD  VDKPFIC
Sbjct:  277 GNCEVDAGDSGASRLNAVTDNGILLSGCQTDQRSEDVYVT-RTGKAYGAFSDAIQMILSAPRKDKKKITNKELVSEARVFLKKRGYSQRPGLYCHDRFVDKPFIC 380          
BLAST of FC871985 vs. ExPASy Swiss-Prot
Match: MCA9_ARATH (Metacaspase-9 OS=Arabidopsis thaliana GN=AMC9 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 2
Query:   53 DGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFI 298
            D GIL+SGCQ D+TSAD        +AYGA SNAIQ ++ E++GA+ N++LV+  R +L++ GF Q P LYC D + D  F+
Sbjct:  243 DSGILMSGCQADETSADVGVGN--GKAYGAFSNAIQRVLNENEGAMKNKQLVMMARDVLERLGFHQHPCLYCSDQNADATFL 322          
The following BLAST results are available for this feature:
BLAST of FC871985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
MCA4_ARATH1.292e-3568.32Metacaspase-4 OS=Arabidopsis thaliana GN=AMC4 PE=1... [more]
MCA5_ARATH1.132e-3163.64Metacaspase-5 OS=Arabidopsis thaliana GN=AMC5 PE=1... [more]
MCA6_ARATH1.060e-2962.50Metacaspase-6 OS=Arabidopsis thaliana GN=AMC6 PE=1... [more]
MCA7_ARATH1.135e-2354.46Metacaspase-7 OS=Arabidopsis thaliana GN=AMC7 PE=1... [more]
MCA8_ARATH7.612e-2048.57Metacaspase-8 OS=Arabidopsis thaliana GN=AMC8 PE=1... [more]
MCA9_ARATH5.106e-1648.78Metacaspase-9 OS=Arabidopsis thaliana GN=AMC9 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2BA12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2BA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871985 ID=FC871985; Name=FC871985; organism=Citrus clementina; type=EST; length=607bp
GGGGGGCAGCAAGAAGGATGTTTATGCTGGAGGAAGCAAGCGCTCACTTC
CTGATGGTGGGATTTTGGTCAGTGGATGTCAGACTGACCAAACTTCTGCT
GATGCCAGCCCTTCTGGGAAGGCTAGCGAAGCTTACGGAGCTCTCAGCAA
TGCAATTCAGATAATTATTGCTGAATCAGATGGTGCAGTGACTAACCGGG
AGCTTGTTTTGTCCACTAGGCAGATGTTGAAGAAGCAGGGATTCACTCAG
CAACCTGGCCTTTATTGCCATGATAATCATGTTGATAAGCCGTTTATCTG
CTGATACGAGCGGGTGCTTTTGGGGTTCAGGAGATCGAATAATTTAAACA
GTTTGCAGGGTTTGTTGTGCTCTTTATGGATATGGTTTGAGTTTCATGTA
GATAAAAAACTTGTTTGAGTTTCAAACAACAGCTTGCTTGTTTAAGTCTT
CACATCTTTTGCCTCGATCTTTGTCGAATTAATCTTGGTCCTTGAATGAA
AGTTTTTAAACGTGTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAACCCAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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