FC872062

Overview
NameFC872062
Unique NameFC872062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.392e-18
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 139
            GAA+IYNKDKAWD  W+FWVGPF GAAIAAFYHQF+LRAGA+KALG
Sbjct:  233 GAAIIYNKDKAWDHHWIFWVGPFAGAAIAAFYHQFVLRAGAIKALG 278          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.818e-18
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 139
            GAAVIYN  KAWDDQW+FWVGPF+GAAIAAFYHQF+LRAGA+KA G
Sbjct:  233 GAAVIYNNQKAWDDQWIFWVGPFVGAAIAAFYHQFVLRAGAMKAYG 278          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.818e-18
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 139
            GAAVIYNKDK WDD W+FWVGP +GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  239 GAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRAGAIKALG 284          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.101e-18
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 139
            GAAV+YNKDK WDD W+FWVGP +GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  241 GAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKALG 286          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.022e-18
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 139
            GAAVIYN +KAWDDQW+FWVGP IGAA AAFYHQFILRA A+KALG
Sbjct:  234 GAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKALG 279          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.637e-17
Identity = 36/46 (78.26%), Postives = 43/46 (93.48%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 139
            GAAVI+N +KAW + W+FWVGPF+GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  239 GAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYILRAGAIKALG 284          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 9.975e-17
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 139
            GAAVIYNK K WDD W+FWVGPFIGAAIAAFYHQF+LRA   K+LG
Sbjct:  232 GAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLG 277          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.975e-17
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 139
            GAAVIYNK K WDD W+FWVGPFIGAAIAAFYHQF+LRA   K+LG
Sbjct:  234 GAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLG 279          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.222e-16
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 139
            G AVI+N DKAWDDQW++WVGPF+GAA+AA YHQ+ILR  A+KALG
Sbjct:  236 GPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALG 281          
BLAST of FC872062 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.222e-16
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    2 GAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 139
            GAAVIYN +KAWDDQW+FWVGPF+GA  AA YHQ+ILRA A+KALG
Sbjct:  227 GAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIKALG 272          
The following BLAST results are available for this feature:
BLAST of FC872062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PIP25_ARATH1.392e-1884.78Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP26_ARATH1.818e-1884.78Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP21_MAIZE1.818e-1884.78Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP22_MAIZE3.101e-1882.61Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP24_ARATH9.022e-1884.78Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP21_ORYSJ7.637e-1778.26Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP22_ARATH9.975e-1780.43Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP21_ARATH9.975e-1780.43Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP27_MAIZE2.222e-1673.91Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP27_ARATH2.222e-1678.26Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CB01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872062 ID=FC872062; Name=FC872062; organism=Citrus clementina; type=EST; length=531bp
GGGGGCCGCTGTTATTTACAACAAGGACAAGGCTTGGGATGATCAATGGC
TCTTCTGGGTTGGACCCTTCATTGGTGCAGCAATTGCAGCTTTCTACCAC
CAATTCATCTTGAGAGCTGGAGCTGTCAAGGCTCTTGGTTCATTCAGGAG
CCAATCCCGTGTCTGATTTTAGTTTCTTCGACAAGTGGATTATCCACATC
TTCATGGGGTTAATGATTTAAAATTGGAAAGAAAAAACTGGGAAGGAGTA
GAGGTGTGTTAAGTTTCAAAAAGTGAATAATGAGGGGGGTGTGATTTGTG
CTTTCAAGGAGTTGTAGGCAGAAAGTCTCTTAGACAATGAGGGGCTTTTT
TGTAAATCCCCTGTGTTGTTTTCAAGCACTTTCCTTAGAATTCACTTCTT
CAATGTTTCTGTCTCTTTCTACTTTGTATTATTTTCTCCGTATGTGATTA
TTATTATTATTATTATTATGCTTTAAGGAAAAAAAAACAAAATTATTAGC
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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