FC872194 | Citrus Genome Database

Overview


Name	FC872194
Unique Name	FC872194
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	631

Libraries


Library Name	Type
AbsCOv1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC872194 vs. ExPASy Swiss-Prot
Match: ODBA_THET2 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1757 PE=3 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 3.396e-13
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 3

Query:  351 QGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAI 476
            +GD++A +NFAAV  AP VF+C NN +AIS +   Q  S  I
Sbjct:  180 EGDWYAGINFAAVQGAPAVFVCENNFYAISVDYRHQTHSPTI 221

HSP 2 Score: 43.5134 bits (101), Expect = 3.396e-13
Identity = 29/87 (33.33%), Postives = 37/87 (42.53%), Query Frame = 2

Query:    2 RQMPIHYGSKKLNYITISSPIA*AILIMSRTYLQIITYTVISDYFHCNL*L*FSTQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 262
            RQMP H GSK LN+ T++SPIA                                + +P A G A S+K+ +    AV   GDG TSE
Sbjct:  126 RQMPEHPGSKALNFFTVASPIA--------------------------------SHVPPAAGAAISMKLLRTGQVAVCTFGDGATSE 180

HSP 3 Score: 24.2534 bits (51), Expect = 3.396e-13
Identity = 12/24 (50.00%), Postives = 13/24 (54.17%), Query Frame = 2

Query:  560 IVVKGRAYGIRSIRVDGNDALAVY 631
            I  K  A+GI    VDG D LA Y
Sbjct:  221 IADKAHAFGIPGYLVDGMDVLASY 244

[Close]

BLAST of FC872194 vs. ExPASy Swiss-Prot
Match: ODPA_STAAW (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MW2) GN=pdhA PE=3 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 4.388e-13
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 3

Query:  351 QGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ 458
            QGDF+  +NFAA  +AP +F+ +NN +AIST  S+Q
Sbjct:  180 QGDFYEGINFAAAYKAPAIFVIQNNNYAISTPRSKQ 215

HSP 2 Score: 40.4318 bits (93), Expect = 4.388e-13
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 2

Query:  167 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 262
            Q  QA GVA++LK   K+A A+ YTGDGG+S+
Sbjct:  149 QYIQAAGVAFALKKRGKNAVAITYTGDGGSSQ 180

HSP 3 Score: 28.8758 bits (63), Expect = 4.388e-13
Identity = 15/28 (53.57%), Postives = 17/28 (60.71%), Query Frame = 2

Query:  548 AGNGIVVKGRAYGIRSIRVDGNDALAVY 631
            A   +  K  A GI  I+VDG DALAVY
Sbjct:  217 AAETLAQKAIAVGIPGIQVDGMDALAVY 244

[Close]

BLAST of FC872194 vs. ExPASy Swiss-Prot
Match: ODPA_STAAS (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MSSA476) GN=pdhA PE=3 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 4.388e-13
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 3

Query:  351 QGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ 458
            QGDF+  +NFAA  +AP +F+ +NN +AIST  S+Q
Sbjct:  180 QGDFYEGINFAAAYKAPAIFVIQNNNYAISTPRSKQ 215

HSP 2 Score: 40.4318 bits (93), Expect = 4.388e-13
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 2

Query:  167 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 262
            Q  QA GVA++LK   K+A A+ YTGDGG+S+
Sbjct:  149 QYIQAAGVAFALKKRGKNAVAITYTGDGGSSQ 180

HSP 3 Score: 28.8758 bits (63), Expect = 4.388e-13
Identity = 15/28 (53.57%), Postives = 17/28 (60.71%), Query Frame = 2

Query:  548 AGNGIVVKGRAYGIRSIRVDGNDALAVY 631
            A   +  K  A GI  I+VDG DALAVY
Sbjct:  217 AAETLAQKAIAVGIPGIQVDGMDALAVY 244

[Close]

BLAST of FC872194 vs. ExPASy Swiss-Prot
Match: ODPA_STAAN (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain N315) GN=pdhA PE=1 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 4.388e-13
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 3

Query:  351 QGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ 458
            QGDF+  +NFAA  +AP +F+ +NN +AIST  S+Q
Sbjct:  180 QGDFYEGINFAAAYKAPAIFVIQNNNYAISTPRSKQ 215

HSP 2 Score: 40.4318 bits (93), Expect = 4.388e-13
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 2

Query:  167 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 262
            Q  QA GVA++LK   K+A A+ YTGDGG+S+
Sbjct:  149 QYIQAAGVAFALKKRGKNAVAITYTGDGGSSQ 180

HSP 3 Score: 28.8758 bits (63), Expect = 4.388e-13
Identity = 15/28 (53.57%), Postives = 17/28 (60.71%), Query Frame = 2

Query:  548 AGNGIVVKGRAYGIRSIRVDGNDALAVY 631
            A   +  K  A GI  I+VDG DALAVY
Sbjct:  217 AAETLAQKAIAVGIPGIQVDGMDALAVY 244

[Close]

BLAST of FC872194 vs. ExPASy Swiss-Prot
Match: ODPA_STAAM (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhA PE=1 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 4.388e-13
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 3

Query:  351 QGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ 458
            QGDF+  +NFAA  +AP +F+ +NN +AIST  S+Q
Sbjct:  180 QGDFYEGINFAAAYKAPAIFVIQNNNYAISTPRSKQ 215

HSP 2 Score: 40.4318 bits (93), Expect = 4.388e-13
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 2

Query:  167 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 262
            Q  QA GVA++LK   K+A A+ YTGDGG+S+
Sbjct:  149 QYIQAAGVAFALKKRGKNAVAITYTGDGGSSQ 180

HSP 3 Score: 28.8758 bits (63), Expect = 4.388e-13
Identity = 15/28 (53.57%), Postives = 17/28 (60.71%), Query Frame = 2

Query:  548 AGNGIVVKGRAYGIRSIRVDGNDALAVY 631
            A   +  K  A GI  I+VDG DALAVY
Sbjct:  217 AAETLAQKAIAVGIPGIQVDGMDALAVY 244

[Close]

BLAST of FC872194 vs. ExPASy Swiss-Prot
Match: ODPA_STAAC (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain COL) GN=pdhA PE=3 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 4.388e-13
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 3

Query:  351 QGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ 458
            QGDF+  +NFAA  +AP +F+ +NN +AIST  S+Q
Sbjct:  180 QGDFYEGINFAAAYKAPAIFVIQNNNYAISTPRSKQ 215

HSP 2 Score: 40.4318 bits (93), Expect = 4.388e-13
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 2

Query:  167 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 262
            Q  QA GVA++LK   K+A A+ YTGDGG+S+
Sbjct:  149 QYIQAAGVAFALKKRGKNAVAITYTGDGGSSQ 180

HSP 3 Score: 28.8758 bits (63), Expect = 4.388e-13
Identity = 15/28 (53.57%), Postives = 17/28 (60.71%), Query Frame = 2

Query:  548 AGNGIVVKGRAYGIRSIRVDGNDALAVY 631
            A   +  K  A GI  I+VDG DALAVY
Sbjct:  217 AAETLAQKAIAVGIPGIQVDGMDALAVY 244

[Close]

BLAST of FC872194 vs. ExPASy Swiss-Prot
Match: ODPA_STAAR (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MRSA252) GN=pdhA PE=3 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 1.226e-12
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 3

Query:  351 QGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ 458
            QGDF+  +NFAA  +AP +F+ +NN +AIST  S+Q
Sbjct:  180 QGDFYEGINFAAAYKAPAIFVIQNNNYAISTPRSKQ 215

HSP 2 Score: 38.891 bits (89), Expect = 1.226e-12
Identity = 17/32 (53.12%), Postives = 23/32 (71.88%), Query Frame = 2

Query:  167 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 262
            Q  Q  GVA++LK   K+A A+ YTGDGG+S+
Sbjct:  149 QYIQTAGVAFALKKRGKNAVAITYTGDGGSSQ 180

HSP 3 Score: 28.8758 bits (63), Expect = 1.226e-12
Identity = 15/28 (53.57%), Postives = 17/28 (60.71%), Query Frame = 2

Query:  548 AGNGIVVKGRAYGIRSIRVDGNDALAVY 631
            A   +  K  A GI  I+VDG DALAVY
Sbjct:  217 AAETLAQKAIAVGIPGIQVDGMDALAVY 244

[Close]

BLAST of FC872194 vs. ExPASy Swiss-Prot
Match: ODBA_THET8 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0229 PE=1 SV=1)

HSP 1 Score: 43.8986 bits (102), Expect = 2.648e-12
Identity = 21/42 (50.00%), Postives = 27/42 (64.29%), Query Frame = 3

Query:  351 QGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQFRSTAI 476
            +GD++A +NFAAV  AP VFI  NN +AIS +   Q  S  I
Sbjct:  180 EGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTI 221

HSP 2 Score: 43.5134 bits (101), Expect = 2.648e-12
Identity = 29/87 (33.33%), Postives = 37/87 (42.53%), Query Frame = 2

Query:    2 RQMPIHYGSKKLNYITISSPIA*AILIMSRTYLQIITYTVISDYFHCNL*L*FSTQLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 262
            RQMP H GSK LN+ T++SPIA                                + +P A G A S+K+ +    AV   GDG TSE
Sbjct:  126 RQMPEHPGSKALNFFTVASPIA--------------------------------SHVPPAAGAAISMKLLRTGQVAVCTFGDGATSE 180

HSP 3 Score: 24.2534 bits (51), Expect = 2.648e-12
Identity = 12/24 (50.00%), Postives = 13/24 (54.17%), Query Frame = 2

Query:  560 IVVKGRAYGIRSIRVDGNDALAVY 631
            I  K  A+GI    VDG D LA Y
Sbjct:  221 IADKAHAFGIPGYLVDGMDVLASY 244

[Close]

BLAST of FC872194 vs. ExPASy Swiss-Prot
Match: ODPA_BACST (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus stearothermophilus GN=pdhA PE=1 SV=2)

HSP 1 Score: 43.5134 bits (101), Expect = 4.422e-12
Identity = 17/36 (47.22%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  351 QGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ 458
            QGDF+  +NFA   +AP +F+ +NN +AIST + +Q
Sbjct:  179 QGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQ 214

HSP 2 Score: 41.5874 bits (96), Expect = 4.422e-12
Identity = 20/32 (62.50%), Postives = 22/32 (68.75%), Query Frame = 2

Query:  167 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 262
            Q  QA GVA  LKM  K A A+ YTGDGGTS+
Sbjct:  148 QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQ 179

HSP 3 Score: 25.7942 bits (55), Expect = 4.422e-12
Identity = 13/21 (61.90%), Postives = 14/21 (66.67%), Query Frame = 2

Query:  569 KGRAYGIRSIRVDGNDALAVY 631
            K  A GI  I+VDG D LAVY
Sbjct:  223 KAVAAGIPGIQVDGMDPLAVY 243

[Close]

BLAST of FC872194 vs. ExPASy Swiss-Prot
Match: ODPA_STAES (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhA PE=3 SV=1)

HSP 1 Score: 43.8986 bits (102), Expect = 7.381e-12
Identity = 18/36 (50.00%), Postives = 27/36 (75.00%), Query Frame = 3

Query:  351 QGDFHAALNFAAVMEAPVVFICRNNGWAISTNISEQ 458
            QGDF+  +NFA+  +AP +F+ +NN +AIST  S+Q
Sbjct:  180 QGDFYEGINFASAYKAPAIFVIQNNNYAISTPRSKQ 215

HSP 2 Score: 38.5058 bits (88), Expect = 7.381e-12
Identity = 17/32 (53.12%), Postives = 22/32 (68.75%), Query Frame = 2

Query:  167 QLPQAVGVAYSLKMEKKDACAVAYTGDGGTSE 262
            Q  Q  GVA+ LK   K+A A+ YTGDGG+S+
Sbjct:  149 QYIQTAGVAFGLKKRGKNAVAITYTGDGGSSQ 180

HSP 3 Score: 27.7202 bits (60), Expect = 7.381e-12
Identity = 14/28 (50.00%), Postives = 17/28 (60.71%), Query Frame = 2

Query:  548 AGNGIVVKGRAYGIRSIRVDGNDALAVY 631
            A   +  K  + GI  I+VDG DALAVY
Sbjct:  217 AAETLAQKAISVGIPGIQVDGMDALAVY 244

The following BLAST results are available for this feature:

BLAST of FC872194 vs. ExPASy Swiss-Prot

BLAST of FC872194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14


Match Name	E-value	Identity	Description
ODBA_THET2	3.396e-13	50.00	2-oxoisovalerate dehydrogenase subunit alpha OS=Th...	[more]
ODPA_STAAW	4.388e-13	52.78	Pyruvate dehydrogenase E1 component subunit alpha ...	[more]
ODPA_STAAS	4.388e-13	52.78	Pyruvate dehydrogenase E1 component subunit alpha ...	[more]
ODPA_STAAN	4.388e-13	52.78	Pyruvate dehydrogenase E1 component subunit alpha ...	[more]
ODPA_STAAM	4.388e-13	52.78	Pyruvate dehydrogenase E1 component subunit alpha ...	[more]
ODPA_STAAC	4.388e-13	52.78	Pyruvate dehydrogenase E1 component subunit alpha ...	[more]
ODPA_STAAR	1.226e-12	52.78	Pyruvate dehydrogenase E1 component subunit alpha ...	[more]
ODBA_THET8	2.648e-12	50.00	2-oxoisovalerate dehydrogenase subunit alpha OS=Th...	[more]
ODPA_BACST	4.422e-12	47.22	Pyruvate dehydrogenase E1 component subunit alpha ...	[more]
ODPA_STAES	7.381e-12	50.00	Pyruvate dehydrogenase E1 component subunit alpha ...	[more]

Pages

Properties


Property Name	Value
Genbank description	C05701F10SK AbsCOv1 Citrus clementina cDNA clone C05701F10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC872194 ID=FC872194; Name=FC872194; organism=Citrus clementina; type=EST; length=631bp
CAGACAGATGCCAATTCATTATGGGTCTAAAAAGCTTAACTACATCACCA
TATCGTCACCTATCGCGTAAGCTATCTTGATCATGTCTAGAACATATCTT
CAAATTATCACGTACACTGTCATCTCTGATTATTTTCATTGCAATCTATG
ATTGTAATTCAGTACACAACTTCCTCAAGCTGTTGGTGTGGCTTATTCTC
TTAAAATGGAGAAAAAGGATGCCTGTGCAGTTGCTTATACTGGAGATGGC
GGCACCAGTGAGGTGATTACTAGCAGCATAATTCCTCTTCCTATATCCTT
TCCTTGGGATTTAAATTGTCTTTTTGCTCATTTTTCTAGTTGTGTTGATT
CAGGGAGATTTTCATGCCGCATTGAACTTTGCAGCAGTTATGGAAGCCCC
TGTCGTCTTCATCTGTCGCAACAATGGCTGGGCCATTAGTACCAATATAT
CAGAACAATTTCGAAGTACTGCTATCACTTCTTTTTTTTTAAAAAAAAAA
AAAATTCTCATTAATAAAAATTTTGGGAATCACACTACATACTTTTTGCA
GGCAATGGTATTGTTGTTAAGGGTCGTGCATATGGTATCCGAAGCATACG
AGTAGATGGAAATGATGCACTTGCTGTTTAT