FC872212

Overview
NameFC872212
Unique NameFC872212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872212 vs. ExPASy Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 6.211e-49
Identity = 91/110 (82.73%), Postives = 95/110 (86.36%), Query Frame = 3 
Query:  138 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLR 467
            IVK+FDD TRE+P GHCLVAGIKK P KVI KDSAKKTAK SRVKAFVKLV+YQHLMPTRYTLDVDLK  V  D LQSKDKK+ A KETKK LEERFKT KNRWFFTKLR
Sbjct:   25 IVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEERFKTGKNRWFFTKLR 134

HSP 2 Score: 36.5798 bits (83), Expect = 6.211e-49
Identity = 17/21 (80.95%), Postives = 18/21 (85.71%), Query Frame = 1 
Query:   76 MVTFLKPNKTVILL*GRYAGR 138
            MV FLKPNK VILL GRYAG+
Sbjct:    1 MVKFLKPNKAVILLQGRYAGK 21
[Close]
BLAST of FC872212 vs. ExPASy Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 4.309e-47
Identity = 86/110 (78.18%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:  138 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLR 467
            I+KSFDD  R+RP GHCLVAG+KK P KVI KDSAKKTAK SRVK F+KLV+YQHLMPTRYTLDVDLK V T D+LQSKDKK+ A KE K +LEERFKT KNRWFFTKLR
Sbjct:   25 IIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLR 134

HSP 2 Score: 33.4982 bits (75), Expect = 4.309e-47
Identity = 16/21 (76.19%), Postives = 17/21 (80.95%), Query Frame = 1 
Query:   76 MVTFLKPNKTVILL*GRYAGR 138
            MV FLK NK VILL GRYAG+
Sbjct:    1 MVKFLKQNKAVILLQGRYAGK 21
[Close]
BLAST of FC872212 vs. ExPASy Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.758e-45
Identity = 84/110 (76.36%), Postives = 93/110 (84.55%), Query Frame = 3 
Query:  138 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLR 467
            I+KSFDD T +R  GHCLVAG+KK P KVI KDSAKKTAK SRVK F+KLV+YQHLMPTRYTLDVDLK V T D+L+SKDKK+ A KE K +LEERFKT KNRWFFTKLR
Sbjct:   25 IIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLR 134

HSP 2 Score: 33.4982 bits (75), Expect = 1.758e-45
Identity = 16/21 (76.19%), Postives = 17/21 (80.95%), Query Frame = 1 
Query:   76 MVTFLKPNKTVILL*GRYAGR 138
            MV FLK NK VILL GRYAG+
Sbjct:    1 MVKFLKQNKAVILLQGRYAGK 21
[Close]
BLAST of FC872212 vs. ExPASy Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.805e-42
Identity = 80/110 (72.73%), Postives = 92/110 (83.64%), Query Frame = 3 
Query:  138 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLR 467
            IVKSFDD T E+  GHCLVAG+KK P KVI KDSAKKTAK SRVK F K+++YQH+MPTRYTLD+DLK VV+AD++ SKDKK+ A KE K + EERFKT KNRWFFTKLR
Sbjct:   25 IVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLR 134

HSP 2 Score: 28.8758 bits (63), Expect = 3.805e-42
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 1 
Query:   76 MVTFLKPNKTVILL*GRYAGR 138
            MV  +KP K VILL GRY G+
Sbjct:    1 MVKCMKPGKAVILLQGRYTGK 21
[Close]
BLAST of FC872212 vs. ExPASy Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.674e-39
Identity = 78/114 (68.42%), Postives = 90/114 (78.95%), Query Frame = 3 
Query:  138 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL----KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLR 467
            IV++FD+ TR+RP GHCLVAGI + P KVI KDSAKK  K SRVKAF+KLV+Y H+MPTRYTLD DL    K VV AD LQ++DKK+ A + TK RL ERFKT KNRWFFTKLR
Sbjct:   25 IVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKARLAERFKTGKNRWFFTKLR 137

HSP 2 Score: 34.2686 bits (77), Expect = 1.674e-39
Identity = 16/21 (76.19%), Postives = 17/21 (80.95%), Query Frame = 1 
Query:   76 MVTFLKPNKTVILL*GRYAGR 138
            M  FLKPNK VILL G+YAGR
Sbjct:    1 MEKFLKPNKAVILLQGKYAGR 21
[Close]
BLAST of FC872212 vs. ExPASy Swiss-Prot
Match: RL27_PYRST (60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.106e-31
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 3 
Query:  138 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLR 467
            IV++FDD T  RP GH LV G++K P KV  + S KK AK S +K F+K V+Y HLMPTRYTLDVD K  V A++ ++  KK+ A KE KK LEE+FKT KNRWFFTKLR
Sbjct:   25 IVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFK-GVAAEAQENPTKKVEARKECKKLLEEKFKTGKNRWFFTKLR 133

HSP 2 Score: 28.1054 bits (61), Expect = 3.106e-31
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 1 
Query:   76 MVTFLKPNKTVILL*GRYAGR 138
            MV FLK  K V++L GR+AG+
Sbjct:    1 MVKFLKSGKVVVVLSGRFAGK 21
[Close]
BLAST of FC872212 vs. ExPASy Swiss-Prot
Match: RL27_HIPCM (60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 2.023e-26
Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 3 
Query:  138 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLR 467
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++KAFVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLR
Sbjct:   25 IVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEERYKTGKNKWFFQKLR 135

HSP 2 Score: 29.6462 bits (65), Expect = 2.023e-26
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 1 
Query:   76 MVTFLKPNKTVILL*GRYAGR 138
            M  F+KP K V++L GRYAGR
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGR 21
[Close]
BLAST of FC872212 vs. ExPASy Swiss-Prot
Match: RL27_DANRE (60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 2.023e-26
Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 3 
Query:  138 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLR 467
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++KAFVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLR
Sbjct:   25 IVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLR 135

HSP 2 Score: 29.6462 bits (65), Expect = 2.023e-26
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 1 
Query:   76 MVTFLKPNKTVILL*GRYAGR 138
            M  F+KP K V++L GRYAGR
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGR 21
[Close]
BLAST of FC872212 vs. ExPASy Swiss-Prot
Match: RL27_ICTPU (60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 4.462e-26
Identity = 56/111 (50.45%), Postives = 73/111 (65.77%), Query Frame = 3 
Query:  138 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLR 467
            IVK+ DD T +RP  H LV+GI + P KV      KK AK S++KAFVK+ +Y HLMPTRY++D+ L K +V  D  +    K  A +E K + EER+KT KN+WFF KLR
Sbjct:   25 IVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKKKVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLR 135

HSP 2 Score: 29.6462 bits (65), Expect = 4.462e-26
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 1 
Query:   76 MVTFLKPNKTVILL*GRYAGR 138
            M  F+KP K V++L GRYAGR
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGR 21
[Close]
BLAST of FC872212 vs. ExPASy Swiss-Prot
Match: RL27_RAT (60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.561e-26
Identity = 57/111 (51.35%), Postives = 73/111 (65.77%), Query Frame = 3 
Query:  138 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLR 467
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLR
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLR 135

HSP 2 Score: 28.8758 bits (63), Expect = 7.561e-26
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 1 
Query:   76 MVTFLKPNKTVILL*GRYAGR 138
            M  F+KP K V++L GRY+GR
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGR 21
The following BLAST results are available for this feature:
BLAST of FC872212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_PEA6.211e-4982.7360S ribosomal protein L27 OS=Pisum sativum GN=RPL2... [more]
RL273_ARATH4.309e-4778.1860S ribosomal protein L27-3 OS=Arabidopsis thalian... [more]
RL272_ARATH1.758e-4576.3660S ribosomal protein L27-2 OS=Arabidopsis thalian... [more]
RL271_ARATH3.805e-4272.7360S ribosomal protein L27-1 OS=Arabidopsis thalian... [more]
RL27_SOLTU1.674e-3968.4260S ribosomal protein L27 OS=Solanum tuberosum GN=... [more]
RL27_PYRST3.106e-3160.0060S ribosomal protein L27 OS=Pyrobotrys stellata G... [more]
RL27_HIPCM2.023e-2652.2560S ribosomal protein L27 OS=Hippocampus comes GN=... [more]
RL27_DANRE2.023e-2652.2560S ribosomal protein L27 OS=Danio rerio GN=rpl27 ... [more]
RL27_ICTPU4.462e-2650.4560S ribosomal protein L27 OS=Ictalurus punctatus G... [more]
RL27_RAT7.561e-2651.3560S ribosomal protein L27 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05701H05SK AbsCOv1 Citrus clementina cDNA clone C05701H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872212 ID=FC872212; Name=FC872212; organism=Citrus clementina; type=EST; length=596bp
AATCACGTTGCCAGCCTCTGCCCAACACACAAAAACCCAGAGAGAGTCGC
GGGCGCGCGAGGAGTGAGAGTTGAAATGGTGACGTTTCTGAAACCAAATA
AGACCGTGATCCTTCTTTAGGGCCGTTACGCCGGCCGATTGTGAAGTCGT
TCGACGACAGGACCCGCGAGAGGCCGAACGGGCACTGTCTGGTAGCGGGG
ATAAAGAAGTAACCGGGCAAAGTGATCCACAAGGACTCGGCGAAGAAGAC
AGCGAAGTAGTCACGCGTCAAGGCCTTCGTCAAGTTGGTCAGCTACCAGC
ACCTGATGCCCACGCGCTACACTCTCGACGTCGATTTGAAGGTAGTCGTG
ACGGCTGATTCCCTCCAGAGCAAGGACAAGAAGATGATAGCTTGCAAGGA
GACCAAGAAACGCCTCGAGGAGAGGTTTAAGACTAGCAAGAATCGTTGGT
TCTTTACTAAGCTCAGGCTTTAGATTTTTAACCAAAGGAAGAAAACGACT
TGTCGTTTTGTTTTGTTTTGTGTTATTGAAAACGCTTTAGTTGTTAAAGT
GCGAATTTTGAGATTTATGTAGTGTTTTGTGAACTTATTTTTTTTC
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