FC872217

Overview
NameFC872217
Unique NameFC872217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length425
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC872217 vs. ExPASy Swiss-Prot
Match: DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum GN=DCL PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.396e-35
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:   13 VLPYHPEFKKKIGCGIDYITIGYHPDFESSRCLFVVRKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRWRHR 240
            +LPYHPE  KKIG G+DYIT+GYHPDFE+SRCLF+VRKDGE VDFSYWKCIKGLIRKNYPLYADSFILRHFR R R
Sbjct:  147 LLPYHPECDKKIGPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFRKRRR 222
The following BLAST results are available for this feature:
BLAST of FC872217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DCL_SOLLC3.396e-3585.53Protein DCL, chloroplastic OS=Solanum lycopersicum... [more]
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Properties
Property NameValue
Genbank descriptionC05701H10SK AbsCOv1 Citrus clementina cDNA clone C05701H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872217 ID=FC872217; Name=FC872217; organism=Citrus clementina; type=EST; length=425bp
CGGCCGGGCGAGGTTCTTCCATATCATCCAGAGTTCAAAAAAAAGATTGG
CTGTGGAATTGATTACATTACAATTGGATATCATCCTGATTTTGAAAGCT
CAAGATGTTTGTTCGTAGTTCGAAAAGATGGAGAATTGGTTGATTTTTCA
TATTGGAAGTGCATAAAGGGCTTGATCAGGAAGAACTACCCACTTTATGC
AGATAGTTTTATTCTCAGACATTTCAGATGGCGGCATAGGCAGGGTGGGC
GACGGTATTAGTCTAAACTTGTACCACCTCCAATCAATTTTTCTTATTTT
TTGAATTATGTAATGTCTATGAGCTCAAATAGTATTTCTGGAGGAAGTTT
TTAGGTATCTATGTCCAGAGGGTGGAAGTGAATACTGCAGAATAACTTGA
TTGGAAATTGGTCTATTTCTTTCAC
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