FC872218

Overview
NameFC872218
Unique NameFC872218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.429e-26
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 1
Query:  199 HACSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 396
            + C+GVRSLN AA+TT DRQAACNCLK A+ +I+G+  N+AAGLP +CGV +PYKISPSTDC  V+
Sbjct:   26 NCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          

HSP 2 Score: 38.891 bits (89), Expect = 2.429e-26
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 3
Query:  120 ITCGQVTASLAPCIPFLRTGG 182
            ITCGQV++SLAPCI +LR GG
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG 21          
BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.976e-26
Identity = 39/64 (60.94%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 396
            C+G+R++N  ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPY+ISPST+C+ V+
Sbjct:   54 CNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          

HSP 2 Score: 44.669 bits (104), Expect = 6.976e-26
Identity = 17/26 (65.38%), Postives = 23/26 (88.46%), Query Frame = 3
Query:  105 PVTNAITCGQVTASLAPCIPFLRTGG 182
            P+  AITCGQV+++LAPCIP++R GG
Sbjct:   22 PIAQAITCGQVSSNLAPCIPYVRGGG 47          
BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 9.082e-26
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 396
            CSGV+SLN AA+TTPDRQAAC CLK AY +I G+    AA  P +CGV IPYKISPSTDCS+V+
Sbjct:   53 CSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          

HSP 2 Score: 40.0466 bits (92), Expect = 9.082e-26
Identity = 16/26 (61.54%), Postives = 21/26 (80.77%), Query Frame = 3
Query:  105 PVTNAITCGQVTASLAPCIPFLRTGG 182
            P T A++CGQV++SLAPCI +L  GG
Sbjct:   21 PYTEALSCGQVSSSLAPCISYLTKGG 46          
BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.182e-25
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 396
            C+G+R++NG ARTT DRQ ACNCLK   G+I G+ PN AAGLP +CGV +PYKIS ST+C+ V+
Sbjct:   52 CNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          

HSP 2 Score: 43.1282 bits (100), Expect = 1.182e-25
Identity = 18/25 (72.00%), Postives = 23/25 (92.00%), Query Frame = 3
Query:  108 VTNAITCGQVTASLAPCIPFLRTGG 182
            V +AITCGQVT+SLAPCI ++R+GG
Sbjct:   21 VAHAITCGQVTSSLAPCIGYVRSGG 45          
BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.045e-23
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 396
            C+G+R++N  ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   28 CNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          

HSP 2 Score: 39.2762 bits (90), Expect = 1.045e-23
Identity = 15/21 (71.43%), Postives = 20/21 (95.24%), Query Frame = 3
Query:  120 ITCGQVTASLAPCIPFLRTGG 182
            ITCGQV+++LAPCIP++R GG
Sbjct:    1 ITCGQVSSALAPCIPYVRGGG 21          
BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.305e-23
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 396
            C GV++L  +ARTT DRQ AC CLK A G I GI    AAGLPS CGV IPYKISPSTDCS+V+
Sbjct:   51 CGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          

HSP 2 Score: 39.6614 bits (91), Expect = 2.305e-23
Identity = 16/26 (61.54%), Postives = 20/26 (76.92%), Query Frame = 3
Query:  105 PVTNAITCGQVTASLAPCIPFLRTGG 182
            P   AITCGQVT++LAPC+ +LR  G
Sbjct:   20 PCAEAITCGQVTSNLAPCLAYLRNTG 45          
BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.904e-23
Identity = 36/64 (56.25%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 396
            C+G++++NG A+TTPDRQAACNCLK   G++ G+ P  A  LP +CGV +PYKIS ST+C+ V+
Sbjct:   52 CNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          

HSP 2 Score: 39.2762 bits (90), Expect = 3.904e-23
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 3
Query:  108 VTNAITCGQVTASLAPCIPFLRTGG 182
            V +AITC QV+A+LAPCI ++R+GG
Sbjct:   21 VAHAITCSQVSANLAPCINYVRSGG 45          
BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 5.081e-23
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 396
            C+G+R++N  ARTTPDR+ ACNCLK+  G+I G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   28 CNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          

HSP 2 Score: 36.965 bits (84), Expect = 5.081e-23
Identity = 15/21 (71.43%), Postives = 19/21 (90.48%), Query Frame = 3
Query:  120 ITCGQVTASLAPCIPFLRTGG 182
            ITCGQV++SLAPCI ++R GG
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGG 21          
BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.897e-22
Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 396
            C+G+R++N  A+TT DRQ ACNCLK+   ++ G+  N AA LP +CGV +PYKISPST+C+ V+
Sbjct:   54 CNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          

HSP 2 Score: 40.817 bits (94), Expect = 1.897e-22
Identity = 15/26 (57.69%), Postives = 22/26 (84.62%), Query Frame = 3
Query:  105 PVTNAITCGQVTASLAPCIPFLRTGG 182
            P+  A+TCGQV+++LAPCI ++R GG
Sbjct:   22 PIAQALTCGQVSSNLAPCIAYVRGGG 47          
BLAST of FC872218 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.440e-22
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  205 CSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 396
            C GV++L G+A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDCS V+
Sbjct:   51 CGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          

HSP 2 Score: 39.6614 bits (91), Expect = 5.440e-22
Identity = 16/26 (61.54%), Postives = 20/26 (76.92%), Query Frame = 3
Query:  105 PVTNAITCGQVTASLAPCIPFLRTGG 182
            P   A+TCGQVTA LAPC+P+L+  G
Sbjct:   20 PHAEALTCGQVTAGLAPCLPYLQGRG 45          
The following BLAST results are available for this feature:
BLAST of FC872218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
LTP1_MORNI2.429e-2666.67Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_PRUDU6.976e-2660.94Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_HELAN9.082e-2668.75Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP_MALDO1.182e-2562.50Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUPE1.045e-2360.94Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_TOBAC2.305e-2367.19Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_PYRCO3.904e-2356.25Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUAR5.081e-2360.94Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_PRUAV1.897e-2254.69Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP1_SOLLC5.440e-2262.50Non-specific lipid-transfer protein 1 OS=Solanum l... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05701H11SK AbsCOv1 Citrus clementina cDNA clone C05701H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872218 ID=FC872218; Name=FC872218; organism=Citrus clementina; type=EST; length=638bp
GAACCTGATAACTCCCTATAACCAAGCAAAAGCCTCCCTGAAGAATCCTC
ATGGCTGCTCTTAAGCTTGTTTGCGCTTTGCTTTTGTGCATTCTGGTGAC
TGCCCCGGTGACTAATGCCATAACATGCGGGCAGGTGACAGCCTCCTTGG
CTCCATGCATCCCTTTCTTGAGGACTGGAGGGCGTTTTCCTCCACCGCCA
TGCGTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTG
ACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACGGAACAATCCGC
GGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAG
AATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTAGGGTCAGGTGAA
GTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATA
AATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGAACGAGTCTCCAC
TTGTATGAGTTTCACTCTCATGTCATGTTTGTATATTTGCTTTTTATGTC
ATATTAAATATGAAAACGCGATCTGAGTTTTGAGTGATTAATTATAGGTA
TTTTGTGGTATGATCATGCGCCATTGTATCTCAGCTTT
back to top