FC872225

Overview
NameFC872225
Unique NameFC872225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length863
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872225 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.733e-14
Identity = 42/133 (31.58%), Postives = 69/133 (51.88%), Query Frame = 1
Query:  337 LSL*KMEGNFDGEKPKKDLEGMMDLNNHHGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPE--TTQHIRYTPTFHFYRDGERVDEMFGAGEERLHDRL 729
            L L K   + D ++P  +L G        G++   ++ +     L +        + N+ A WCG C QI P + +LS N+P L F+  D+DE  +   +  I+ TPTF F RDG++VD++ GA +  LH ++
Sbjct:    3 LCLAKRNHDADDDEPHIELAG--------GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127          
BLAST of FC872225 vs. ExPASy Swiss-Prot
Match: THIO1_DICDI (Thioredoxin-1 OS=Dictyostelium discoideum GN=trxA PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.395e-11
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1
Query:  502 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE--CPETTQHIRYTPTFHFYRDGERVDEMFGAGEERLHDRL 729
            V+++ A WCG C  I P F KLSN F   +F++ DID+         I+  PTFHFYR+G +V E  GA E  L   L
Sbjct:   24 VVDFSAVWCGPCRAISPVFEKLSNEFITFTFLHVDIDKLNVHPIVSKIKSVPTFHFYRNGSKVSEFSGASESILRSTL 101          
BLAST of FC872225 vs. ExPASy Swiss-Prot
Match: THIO3_DICDI (Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.085e-11
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1
Query:  502 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE--CPETTQHIRYTPTFHFYRDGERVDEMFGAGEERLHDRL 729
            V+++ A WCG C  I P F KLSN F   +F++ DID+       + IR  PTF+FY +G +V E  GA E  L   L
Sbjct:   23 VVDFSAEWCGPCRAIAPVFDKLSNEFTTFTFVHVDIDKVNTHPIVKEIRSVPTFYFYVNGAKVSEFSGANEATLRSTL 100          
BLAST of FC872225 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.335e-11
Identity = 30/83 (36.14%), Postives = 52/83 (62.65%), Query Frame = 1
Query:  502 VINYGASWCGVCNQILPAFCKLSNN--FPKLSFIYADIDECPETTQH--IRYTPTFHFYRDGERVDEMFGAGEERLHDRLWSH 738
            V+++ A+WCG C +I P F  LS +  +  + F+  D+D+  + + H  I+  PTFHFY++G+++DE  GA E+ L  ++  H
Sbjct:   24 VVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDH 106          
The following BLAST results are available for this feature:
BLAST of FC872225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TRXH_POPJC6.733e-1431.58Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
THIO1_DICDI2.395e-1143.59Thioredoxin-1 OS=Dictyostelium discoideum GN=trxA ... [more]
THIO3_DICDI4.085e-1142.31Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC ... [more]
THIO_ICTPU5.335e-1136.14Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1AA07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1AA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872225 ID=FC872225; Name=FC872225; organism=Citrus clementina; type=EST; length=863bp
CGGGCCGGGGGAGGAATTTTTTCTCAAATTTTTTTCGGGTTTTCTCTGAA
ATCAAAATGAATAACTAAACACTTCTTTGCTCTAAATCCTAAACCAAAAC
ATCATCAATCAAAAAACAAAACCATTAGAGAAGAAGAAGAGAAACATAAA
ACGATCTCGTCCTTCTTTAACAAAACGATCAAAATCCACACAGTAAAGCC
ATCTGAGTCCACAGATCCCGCTGAGGCAGGAGGCCGTTAAGGGAACAGGA
CAACCAGGCTGCAGGTCACTGGAGGGAGATCGTGAGGAAAAGAAGAAAAG
ATAATTTAGTAGCACTGGCGAGTTGCAGCTGGGATTCTCTCTCTGTGAAA
AATGGAGGGCAATTTCGATGGTGAGAAACCAAAGAAAGACTTAGAGGGCA
TGATGGATCTTAATAATCATCATGGCCACTTGAAAACTGCGTCCAGTGAT
CAAAATCACAAGGATATTCTTCTTCAAATTAAGTCCTCTAAAATCCCTGC
GGTTATCAATTACGGGGCATCATGGTGTGGAGTGTGCAACCAGATTCTCC
CCGCATTCTGTAAGCTGAGCAACAATTTTCCCAAGCTTTCTTTCATTTAT
GCAGATATTGACGAATGCCCGGAAACAACTCAGCATATTCGTTACACGCC
TACATTTCATTTTTATCGTGATGGTGAGAGAGTAGATGAGATGTTTGGTG
CTGGAGAAGAACGCCTGCATGATCGATTGTGGTCACATTCATGAAAACAT
GTCTTTTAAATTAGCTTTTGTTTAAGACAATTTGCTGTGACCTGTGAGTG
ATATGTATTTTGTCAGACAATATACGGATATACCCTTTGGCAAAAAAAAA
AAAAAAAAAAAAA
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