FC872228

Overview
NameFC872228
Unique NameFC872228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872228 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.818e-29
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 3 
Query:    6 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 188
            HETAD+NTFSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILWKP
Sbjct:  297 HETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP 357
[Close]
BLAST of FC872228 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.374e-29
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 3 
Query:    6 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 188
            HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  296 HETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356
[Close]
BLAST of FC872228 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.101e-29
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 3 
Query:    6 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 188
            HETADINTFSWGVANRG+S+RVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  296 HETADINTFSWGVANRGSSVRVGRDTEKQGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
[Close]
BLAST of FC872228 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 5.290e-29
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 3 
Query:    6 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 188
            HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  296 HETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
[Close]
BLAST of FC872228 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.909e-29
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 3 
Query:    6 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 188
            HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE+TILWKP
Sbjct:  296 HETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAESTILWKP 356
[Close]
BLAST of FC872228 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.178e-28
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 3 
Query:    6 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 188
            HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  296 HETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
[Close]
BLAST of FC872228 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.178e-28
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 3 
Query:    6 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 188
            HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILW P
Sbjct:  296 HETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWNP 356
[Close]
BLAST of FC872228 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.539e-28
Identity = 56/61 (91.80%), Postives = 60/61 (98.36%), Query Frame = 3 
Query:    6 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 188
            HET DINTFSWGVANRGAS+RVGRDTEK+GKGYFEDRRP+SNMDPYVVTSMIAETT+LWKP
Sbjct:  296 HETTDINTFSWGVANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTLLWKP 356
[Close]
BLAST of FC872228 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.539e-28
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 3 
Query:    6 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 188
            HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LW P
Sbjct:  296 HETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWNP 356
[Close]
BLAST of FC872228 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.010e-28
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 3 
Query:    6 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 188
            HETADINTFSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL KP
Sbjct:  295 HETADINTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILLKP 355
The following BLAST results are available for this feature:
BLAST of FC872228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GLNA_PINSY1.818e-2995.08Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA1_ALNGL2.374e-2996.72Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA2_PHAVU3.101e-2995.08Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA1_LOTJA5.290e-2996.72Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA2_VITVI6.909e-2996.72Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA1_VITVI1.178e-2896.72Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLN11_ARATH1.178e-2895.08Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA3_MEDSA1.539e-2891.80Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLN12_ARATH1.539e-2895.08Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLNA1_PEA2.010e-2896.72Glutamine synthetase nodule isozyme OS=Pisum sativ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1AA10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1AA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872228 ID=FC872228; Name=FC872228; organism=Citrus clementina; type=EST; length=487bp
GGGGACATGAAACTGCAGATATCAACACTTTCTCTTGGGGTGTCGCTAAC
AGAGGTGCCTCCATTCGCGTTGGTCGTGACACTGAGAAAGAAGGAAAGGG
ATACTTTGAAGACAGAAGGCCAGCTTCAAACATGGACCCATATGTTGTGA
CTTCAATGATCGCTGAAACCACCATTCTCTGGAAGCCTTAGAAAACAAAC
TTGAGCATCGATGACGAAGAAGAAATCGAGGGAAAATGAAAGCTTAAATT
GAACCCACCACAAAAATAATTCTTATGTTTTTATCTTTGTAATGTGTCTA
TGCATTTAAGTCTGTTGTTTGAACTTGTTCCTTGCCATTCAAAACTGTAC
TCCGTTTCTCTTGTTCTTCATTCTTTGGGATGCTCGGTTGTGATTACTAT
ATTATAGTTTAAAACTACTTCTCCTCTGTTTAAAAAATAAAGAAGATTTA
TAGCGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top