FC872230

Overview
NameFC872230
Unique NameFC872230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872230 vs. ExPASy Swiss-Prot
Match: MTPC2_ARATH (Metal tolerance protein C2 OS=Arabidopsis thaliana GN=MTPC2 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 5.702e-61
Identity = 112/137 (81.75%), Postives = 126/137 (91.97%), Query Frame = 1
Query:    4 VCLHVLADSIRSAGLILASWFLSLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVKKGVDDRPILQFVHGLYHDLGVQDLTVQIDY 414
            VCLHV++DSIRSAGLILASW LSLGV+NAEVLCLG+VSV VFMLVMPLFK TGG+LLQMAPP+IPSSALSKC RQI SREDVTEV QARFWE+VPGH VGSL LQVK G+D+RP+LQ+V+ +YHDLGVQDLT+Q DY
Sbjct:  256 VCLHVISDSIRSAGLILASWLLSLGVENAEVLCLGLVSVTVFMLVMPLFKATGGVLLQMAPPNIPSSALSKCLRQITSREDVTEVLQARFWEVVPGHTVGSLRLQVKSGIDERPLLQYVYDVYHDLGVQDLTLQTDY 392          
BLAST of FC872230 vs. ExPASy Swiss-Prot
Match: ZNT7_MOUSE (Zinc transporter 7 OS=Mus musculus GN=Slc30a7 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.126e-16
Identity = 46/139 (33.09%), Postives = 83/139 (59.71%), Query Frame = 1
Query:    1 GVCLHVLADSIRSAGLILASWFL-SLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVKKGVDDRPILQFVHGLYHDLGVQDLTVQIDY 414
            GV LH+LAD++ S G+I ++  + + G+  A+ +C  ++++ + + V+PL + + GIL+Q  PPS+ ++ L +C++++   + V  + +  FW L     VG+L L V    D R IL   H ++   GV+ L VQID+
Sbjct:  238 GVFLHILADTLGSIGVIASAIMMQNFGLMIADPICSILIAILIVVSVIPLLRESVGILMQRTPPSLENT-LPQCYQRVQQLQGVYNLQEQHFWTLCSDVYVGTLKLVVAPDADARWILSQTHNIFTQAGVRQLYVQIDF 375          
BLAST of FC872230 vs. ExPASy Swiss-Prot
Match: ZNT7_RAT (Zinc transporter 7 OS=Rattus norvegicus GN=Slc30a7 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.470e-16
Identity = 46/139 (33.09%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    1 GVCLHVLADSIRSAGLILASWFL-SLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVKKGVDDRPILQFVHGLYHDLGVQDLTVQIDY 414
            GV LH+LAD++ S G+I ++  + + G+  A+ +C  ++++ + + V+PL + + GIL+Q  PPS+  + L +C++++   + V  + +  FW L     VG+L L V    D R IL   H ++   GV+ L VQID+
Sbjct:  238 GVFLHILADTLGSIGVIASAIMMQNFGLMIADPICSILIAILIVVSVIPLLRESIGILMQRTPPSL-ENVLPQCYQRVQQLQGVYNLQEQHFWTLCSDVYVGTLKLVVAPDADARWILSQTHNIFTQAGVRQLYVQIDF 375          
BLAST of FC872230 vs. ExPASy Swiss-Prot
Match: ZNT7_XENTR (Zinc transporter 7 OS=Xenopus tropicalis GN=slc30a7 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.920e-16
Identity = 45/138 (32.61%), Postives = 81/138 (58.70%), Query Frame = 1
Query:    1 GVCLHVLADSIRSAGLILASWFLS-LGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVKKGVDDRPILQFVHGLYHDLGVQDLTVQID 411
            GV LH++AD++ S G+I+++  +   G+  A+ +C  ++++ +F+ V+PL K + GIL+Q  PPS+    L +C++++   + V  + +  FW L     +G+L L +    D R IL   H ++   GV+ L VQID
Sbjct:  250 GVFLHIVADALGSVGVIISTILMQRYGLMIADPICSMLIALLIFVSVIPLLKQSIGILMQRTPPSL-DHVLPQCYQRVQQLQGVYHLQEPHFWTLCTDVYIGTLKLVIGPEADARWILSQTHNIFTQAGVRQLYVQID 386          
BLAST of FC872230 vs. ExPASy Swiss-Prot
Match: ZNT7B_XENLA (Zinc transporter 7-B OS=Xenopus laevis GN=slc30a7-B PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.920e-16
Identity = 45/138 (32.61%), Postives = 81/138 (58.70%), Query Frame = 1
Query:    1 GVCLHVLADSIRSAGLILASWFLS-LGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVKKGVDDRPILQFVHGLYHDLGVQDLTVQID 411
            GV LH++AD++ S G+I+++  +   G+  A+ +C  ++++ +F+ V+PL K + GIL+Q  PPS+    L +C++++   + V  + +  FW L     +G+L L +    D R IL   H ++   GV+ L VQID
Sbjct:  250 GVFLHIVADALGSVGVIISTILMQQYGLMIADPICSMLIALLIFVSVIPLLKQSIGILMQRTPPSL-DHVLPQCYQRVQQLQGVYHLQEPHFWTLCTDVYIGTLKLVIGPEADARWILSQTHNIFTQAGVRQLYVQID 386          
BLAST of FC872230 vs. ExPASy Swiss-Prot
Match: ZNT7_HUMAN (Zinc transporter 7 OS=Homo sapiens GN=SLC30A7 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16
Identity = 46/139 (33.09%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    1 GVCLHVLADSIRSAGLILASWFL-SLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVKKGVDDRPILQFVHGLYHDLGVQDLTVQIDY 414
            GV LH+LAD++ S G+I ++  + + G+  A+ +C  ++++ + + V+PL + + GIL+Q  PP + +S L +C++++   + V  + +  FW L     VG+L L V    D R IL   H ++   GV+ L VQID+
Sbjct:  236 GVFLHILADTLGSIGVIASAIMMQNFGLMIADPICSILIAILIVVSVIPLLRESVGILMQRTPPLLENS-LPQCYQRVQQLQGVYSLQEQHFWTLCSDVYVGTLKLIVAPDADARWILSQTHNIFTQAGVRQLYVQIDF 373          
BLAST of FC872230 vs. ExPASy Swiss-Prot
Match: ZNT7A_XENLA (Zinc transporter 7-A OS=Xenopus laevis GN=slc30a7-A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16
Identity = 44/139 (31.65%), Postives = 81/139 (58.27%), Query Frame = 1
Query:    1 GVCLHVLADSIRSAGLILASWFLS-LGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVKKGVDDRPILQFVHGLYHDLGVQDLTVQIDY 414
            GV LH++AD++ S G+I ++  +   G+  A+ +C  ++++ +F+ V+PL K + GIL+Q  PP++    L +C++++   + V  + +  FW L     +G+L L +    D R IL   H ++   GV+ L VQID+
Sbjct:  246 GVFLHIVADTLGSVGVIFSTILMQRYGLMIADPICSMLIALLIFVSVIPLLKQSIGILMQRTPPAL-DHVLPQCYQRVQQLQGVYHLQEPHFWTLCTDVYIGTLKLVIGPEADARWILSQTHNIFTQAGVRQLYVQIDF 383          
BLAST of FC872230 vs. ExPASy Swiss-Prot
Match: ZNT7_CHICK (Zinc transporter 7 OS=Gallus gallus GN=SLC30A7 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.587e-16
Identity = 44/138 (31.88%), Postives = 82/138 (59.42%), Query Frame = 1
Query:    1 GVCLHVLADSIRSAGLILASWFL-SLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVKKGVDDRPILQFVHGLYHDLGVQDLTVQID 411
            GV LH++AD++ S G+I+++  + + G+  A+ +C  ++++ + + ++PL K + GIL+Q  PPS+  +AL +C++++   + V  +    FW L     +G+L L V    D R IL   H ++   GV+ L +QID
Sbjct:  238 GVFLHIVADTLGSIGVIISAILMQNYGLMIADPICSMLIALLIGVSIVPLLKESIGILMQRTPPSL-ENALPQCYQRVQQLQGVYSLHDPHFWTLCTDVYIGTLKLLVAPDADGRWILSQTHNIFTQAGVRQLYIQID 374          
BLAST of FC872230 vs. ExPASy Swiss-Prot
Match: ZNT7_BOVIN (Zinc transporter 7 OS=Bos taurus GN=SLC30A7 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.531e-16
Identity = 45/139 (32.37%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    1 GVCLHVLADSIRSAGLILASWFL-SLGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVKKGVDDRPILQFVHGLYHDLGVQDLTVQIDY 414
            GV LH+LAD++ S G+I ++  + + G+  A+ +C  ++++ + + V+PL + + GIL+Q  PP + ++ L +C++++   + V  + +  FW L     VG+L L V    D R IL   H ++   GV+ L VQID+
Sbjct:  236 GVFLHILADTLGSIGVIASAIMMQNFGLMIADPICSILIAMLIVISVIPLLRESVGILMQRTPPLLENT-LPQCYQRVQQLQGVYSLQEQHFWTLCSDVYVGTLKLVVAPDADARWILSQTHNIFTQAGVRQLYVQIDF 373          
BLAST of FC872230 vs. ExPASy Swiss-Prot
Match: ZNT7_DANRE (Zinc transporter 7 OS=Danio rerio GN=slc30a7 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.730e-15
Identity = 43/138 (31.16%), Postives = 81/138 (58.70%), Query Frame = 1
Query:    1 GVCLHVLADSIRSAGLILASWFLS-LGVQNAEVLCLGIVSVAVFMLVMPLFKVTGGILLQMAPPSIPSSALSKCWRQIVSREDVTEVSQARFWELVPGHVVGSLSLQVKKGVDDRPILQFVHGLYHDLGVQDLTVQID 411
            GV LH++AD++ S G+I+++  +    +  A+ +C  ++++ + + V+PL + + GIL+Q  PPS+   AL +C++++   + V  + +  FW L     +G+L L V    D R IL   H ++  +GV+ L VQI+
Sbjct:  247 GVFLHIVADTLGSVGVIISAILMQKYDLMIADPICSMLIALLIGVSVVPLLRESIGILMQRTPPSL-DHALPECYQRVQQLQGVYNLQEPHFWTLCTDVYIGTLKLLVAPDADSRWILSQTHNIFTQVGVRQLYVQIE 383          
The following BLAST results are available for this feature:
BLAST of FC872230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
MTPC2_ARATH5.702e-6181.75Metal tolerance protein C2 OS=Arabidopsis thaliana... [more]
ZNT7_MOUSE1.126e-1633.09Zinc transporter 7 OS=Mus musculus GN=Slc30a7 PE=1... [more]
ZNT7_RAT1.470e-1633.09Zinc transporter 7 OS=Rattus norvegicus GN=Slc30a7... [more]
ZNT7_XENTR1.920e-1632.61Zinc transporter 7 OS=Xenopus tropicalis GN=slc30a... [more]
ZNT7B_XENLA1.920e-1632.61Zinc transporter 7-B OS=Xenopus laevis GN=slc30a7-... [more]
ZNT7_HUMAN3.276e-1633.09Zinc transporter 7 OS=Homo sapiens GN=SLC30A7 PE=1... [more]
ZNT7A_XENLA3.276e-1631.65Zinc transporter 7-A OS=Xenopus laevis GN=slc30a7-... [more]
ZNT7_CHICK5.587e-1631.88Zinc transporter 7 OS=Gallus gallus GN=SLC30A7 PE=... [more]
ZNT7_BOVIN9.531e-1632.37Zinc transporter 7 OS=Bos taurus GN=SLC30A7 PE=2 S... [more]
ZNT7_DANRE4.730e-1531.16Zinc transporter 7 OS=Danio rerio GN=slc30a7 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AB01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872230 ID=FC872230; Name=FC872230; organism=Citrus clementina; type=EST; length=638bp
GGGGTTTGCTTGCATGTTCTTGCAGATTCTATTCGCAGTGCAGGTTTGAT
ATTGGCATCTTGGTTTTTGTCCCTTGGGGTCCAGAATGCTGAAGTTTTGT
GTTTGGGGATAGTTTCAGTTGCAGTCTTCATGCTTGTCATGCCACTATTC
AAAGTGACTGGTGGTATCTTGCTTCAGATGGCACCTCCTAGCATTCCATC
TTCAGCATTGAGTAAATGTTGGAGACAGATTGTTTCTCGGGAAGATGTTA
CAGAAGTTTCCCAAGCCCGTTTTTGGGAGCTAGTGCCTGGCCATGTTGTT
GGTTCTCTCTCACTTCAGGTGAAGAAGGGAGTGGATGACCGCCCAATACT
TCAATTTGTGCATGGTTTATACCACGATTTAGGAGTACAAGATTTGACAG
TGCAAATTGATTATGATTGAGCTTTAATCATTTGTCTTTCAGTATTTCTT
GCAATTGACCGTTAAAGAATAGCTTTAGATTGAAGCCATTATCACTTGTA
GCTGCTGTTGTCCCTCAAGCACTTGTGTTAGTAGTAGCAAGATTTTGAAT
CAATTTCTATGTAGTTAAAGATCATTTTCAGTAATACACATACTGTAATT
TATTCATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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