FC872261

Overview
NameFC872261
Unique NameFC872261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length783
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL_MALDO (Beta-galactosidase OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.770e-39
Identity = 71/119 (59.66%), Postives = 88/119 (73.95%), Query Frame = 3
Query:    9 QGTSLALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXXTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRTT 365
            +G S+A K P+TWYK TF  PPG+ PLAL+MG+MGKG +WINGQS+GR WP               TY +KKCRT+ G+PSQ WYH+PRSWL P+GNLLVVFE+WGG+P  ISL++R T
Sbjct:  606 EGPSMAEKQPLTWYKATFNAPPGDAPLALDMGSMGKGQIWINGQSVGRHWPGYIARGSCGDCSYAGTYDDKKCRTHCGEPSQRWYHIPRSWLTPTGNLLVVFEEWGGDPSRISLVERGT 724          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL1_ARATH (Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.080e-36
Identity = 67/118 (56.78%), Postives = 84/118 (71.19%), Query Frame = 3
Query:    6 AQGTSLALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXXTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKR 359
            A+G  +A K P+TWYKTTF  P G+ PLA++MG+MGKG +WINGQS+GR WP               T+ E KC    G+ SQ WYHVPRSWLKPSGNLLVVFE+WGG+P+ I+L++R
Sbjct:  615 AEGAFVAQKQPLTWYKTTFSAPAGDSPLAVDMGSMGKGQIWINGQSLGRHWPAYKAVGSCSECSYTGTFREDKCLRNCGEASQRWYHVPRSWLKPSGNLLVVFEEWGGDPNGITLVRR 732          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGA12_ARATH (Beta-galactosidase 12 OS=Arabidopsis thaliana GN=BGAL12 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.329e-36
Identity = 67/118 (56.78%), Postives = 85/118 (72.03%), Query Frame = 3
Query:    9 QGTSLALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXXTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 362
            +G+ +A K P+TWYK+TF  P GN+PLAL+M  MGKG +WINGQ+IGR WP               T+TEKKC +  G+ SQ WYHVPRSWLKP+ NL++V E+WGGEP+ ISL+KRT
Sbjct:  609 EGSLVAKKQPLTWYKSTFDSPTGNEPLALDMNTMGKGQMWINGQNIGRHWPAYTARGKCERCSYAGTFTEKKCLSNCGEASQRWYHVPRSWLKPTNNLVIVLEEWGGEPNGISLVKRT 726          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL2_ARATH (Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BGAL2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.551e-35
Identity = 65/111 (58.56%), Postives = 79/111 (71.17%), Query Frame = 3
Query:   30 KLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXXTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 362
            K P+TWYK++F  P GN+PLAL+M  MGKG VW+NG +IGR WP                Y EKKC ++ G+PSQ WYHVPRSWLKP GNLLV+FE+WGG+P  ISL+KRT
Sbjct:  615 KQPLTWYKSSFDTPRGNEPLALDMNTMGKGQVWVNGHNIGRHWPAYTARGNCGRCNYAGIYNEKKCLSHCGEPSQRWYHVPRSWLKPFGNLLVIFEEWGGDPSGISLVKRT 725          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL_SOLLC (Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.025e-35
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 3
Query:    9 QGTSLALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXXTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKR 359
            +G+ +A K P++WYKTTF  P GN+PLAL+M  MGKG VWINGQS+GR WP                + EKKC T  G+ SQ WYHVPRSWL P+GNLLVVFE+WGG+P+ I+L+KR
Sbjct:  604 EGSLVAQKQPLSWYKTTFNAPDGNEPLALDMNTMGKGQVWINGQSLGRHWPAYKSSGSCSVCNYTGWFDEKKCLTNCGEGSQRWYHVPRSWLYPTGNLLVVFEEWGGDPYGITLVKR 720          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL_DIACA (Putative beta-galactosidase OS=Dianthus caryophyllus GN=CARSR12 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.454e-35
Identity = 69/114 (60.53%), Postives = 79/114 (69.30%), Query Frame = 3
Query:   24 ALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXX-TYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 362
            A K P+ WYKTTF  P GNDPLAL++G+MGKG  WINGQSIGR W                 TYTE KC +  GK SQ WYHVPRSWL+P GNLLVVFE+WGG+  W+SL+KRT
Sbjct:  616 AWKQPLVWYKTTFDAPGGNDPLALDLGSMGKGQAWINGQSIGRHWSNNIAKGSCNDNCNYAGTYTETKCLSDCGKSSQKWYHVPRSWLQPRGNLLVVFEEWGGDTKWVSLVKRT 729          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL_ASPOF (Beta-galactosidase OS=Asparagus officinalis PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.924e-34
Identity = 65/111 (58.56%), Postives = 77/111 (69.37%), Query Frame = 3
Query:   30 KLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXXTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 362
            K P+TWYKT F  PPGN+PLAL+M  MGKG +WINGQSIGR WP               TY EKKC +  G+ SQ WYHVPRSWL P+GN LVV E+WGG+P  IS++KR+
Sbjct:  609 KQPLTWYKTFFNAPPGNEPLALDMNTMGKGQIWINGQSIGRYWPAYKASGSCGSCDYRGTYNEKKCLSNCGEASQRWYHVPRSWLIPTGNFLVVLEEWGGDPTGISMVKRS 719          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL4_ARATH (Beta-galactosidase 4 OS=Arabidopsis thaliana GN=BGAL4 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.737e-32
Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 3
Query:    9 QGTSLALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXXTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 362
            QG+ +A K P+TWYK+TF  P GN+PLAL+M  MGKG VWING++IGR WP               T+  KKC +  G+ SQ WYHVPRSWLK S NL+VVFE+ GG+P+ ISL+KRT
Sbjct:  608 QGSFVAKKQPLTWYKSTFATPAGNEPLALDMNTMGKGQVWINGRNIGRHWPAYKAQGSCGRCNYAGTFDAKKCLSNCGEASQRWYHVPRSWLK-SQNLIVVFEELGGDPNGISLVKRT 724          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL2_ORYSJ (Beta-galactosidase 2 OS=Oryza sativa subsp. japonica GN=Os01g0580200 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.737e-32
Identity = 61/111 (54.95%), Postives = 75/111 (67.57%), Query Frame = 3
Query:   30 KLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXXTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 362
            K P+TWYK  F  P G++PLAL+M +MGKG +WINGQ IGR WP                Y E KC+T  G  SQ WYHVPRSWL P+GNLLV+FE+WGG+P  IS++KR+
Sbjct:  609 KQPLTWYKAFFNAPDGDEPLALDMSSMGKGQIWINGQGIGRYWPGYKASGNCGTCDYRGEYDETKCQTNCGDSSQRWYHVPRSWLSPTGNLLVIFEEWGGDPTGISMVKRS 719          
BLAST of FC872261 vs. ExPASy Swiss-Prot
Match: BGAL3_ARATH (Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.310e-29
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 3
Query:   36 PMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXXXTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLLKRT 362
            P+TW+KT F  P GN+PLAL+M  MGKG +W+NG+SIGR W                TY   KC+T  G+P+Q WYHVPR+WLKPS NLLV+FE+ GG P  +SL+KR+
Sbjct:  625 PLTWHKTYFDAPEGNEPLALDMEGMGKGQIWVNGESIGRYWTAFATGDCSHCSYTG-TYKPNKCQTGCGQPTQRWYHVPRAWLKPSQNLLVIFEELGGNPSTVSLVKRS 732          
The following BLAST results are available for this feature:
BLAST of FC872261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
BGAL_MALDO1.770e-3959.66Beta-galactosidase OS=Malus domestica PE=1 SV=1[more]
BGAL1_ARATH4.080e-3656.78Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BG... [more]
BGA12_ARATH5.329e-3656.78Beta-galactosidase 12 OS=Arabidopsis thaliana GN=B... [more]
BGAL2_ARATH1.551e-3558.56Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BG... [more]
BGAL_SOLLC2.025e-3557.26Beta-galactosidase OS=Solanum lycopersicum PE=1 SV... [more]
BGAL_DIACA3.454e-3560.53Putative beta-galactosidase OS=Dianthus caryophyll... [more]
BGAL_ASPOF2.924e-3458.56Beta-galactosidase OS=Asparagus officinalis PE=2 S... [more]
BGAL4_ARATH2.737e-3255.93Beta-galactosidase 4 OS=Arabidopsis thaliana GN=BG... [more]
BGAL2_ORYSJ2.737e-3254.95Beta-galactosidase 2 OS=Oryza sativa subsp. japoni... [more]
BGAL3_ARATH6.310e-2953.21Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BG... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DB01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2DB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872261 ID=FC872261; Name=FC872261; organism=Citrus clementina; type=EST; length=783bp
GGGGGGCACAGGGAACATCGTTGGCCCTAAAATTACCGATGACGTGGTAC
AAGACTACTTTCATTGTACCGCCAGGCAACGACCCGTTAGCTTTAAACAT
GGGTGCAATGGGAAAGGGGATGGTTTGGATCAATGGTCAAAGTATTGGGC
GCCGCTGGCCTGGATATAGAGGAAATGGAAATTGTGGTGGTTGTAATTAT
GCTGGAACTTACACCGAGAAGAAATGCCGAACTTACTGGGGAAAGCCCTC
TCAACCATGGTATCACGTTCCCCGCTCATGGCTGAAGCCGAGTGGAAACC
TGTTGGTTGTGTTTGAAAAATGGGGCGGTGAACCACATTGGATCTCTTTG
CTCAAGAGAACAACATAAACAGCTACAACAATTATTTTCTTTTTCTTTTT
CTCATTCTTCAATAATTCAAGCATACGCTTCCCTCATTTGCCAAGGTGAT
GATGGTTTGACTCCGACAAACGGGCAAACCAAAGTGTCCAACCATACCCA
TAATCTGGCCAAAGCCAAGAAGTATAGATTGTGAAGTTGTTGCAAGGATG
CTCCTTGTTGTATGTACATAGTCATATTCAAGCTATATATTTGTCAATAT
AGCTCTGCAAGCATACTTAAAGGTCATTCAGTCTGATAGGCAAAAGTGTT
AGTTCCGCAAACATTCATGTACGCTCGCTGGGTTTCACTCTTCATCATCT
ACAAGTTAATAGTGGAAATCTTTTATTTCCTTGTCATTTAAAAATAAGTG
TGAAAGTAATACATAGCAGCTTTTGAATTGCAT
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