FC872292

Overview
NameFC872292
Unique NameFC872292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.500e-35
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 3
Query:    3 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 290
            VLSFK+A+WFWMT Q PKPSCH+V+   W+PSA +  AGRLPGYG+ TN++NGG+ECG+G N  V +R+GFF  +CG  G+  G+NLDCYNQRP+G
Sbjct:  148 VLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.569e-35
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 3
Query:    3 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 314
            V+SFKSAIWFWMT Q PKPSCH+VI   W+PS ++  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  215 VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.620e-34
Identity = 63/100 (63.00%), Postives = 76/100 (76.00%), Query Frame = 3
Query:    6 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLM 302
            ++FK+A+WFWMT Q PKPSCH VI + W PSA +  AGR+PGYG+ TNIINGGIECGQGG N+A  NRIGF+ T+C   G   G NLDCY QRP+G  L+
Sbjct:  198 IAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 1.620e-34
Identity = 61/95 (64.21%), Postives = 76/95 (80.00%), Query Frame = 3
Query:    3 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 287
            V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  +  AGRLPGYG+ TNIINGG+ECG+G +  V +RIGF+  +C  FG+ PG NLDCYNQR +
Sbjct:  232 VIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.116e-34
Identity = 61/104 (58.65%), Postives = 80/104 (76.92%), Query Frame = 3
Query:    3 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 314
            V+SFKSA+WFWMT Q PKPSCH+VII  W+PS+ +  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  221 VISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.116e-34
Identity = 63/104 (60.58%), Postives = 80/104 (76.92%), Query Frame = 3
Query:    3 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 314
            V+SFK+A+WFWMT Q PKPSCH+VI   W PS+ +  AGRLPGYG  TNIINGG+ECG+G +  V++RIGF+  +C  FGI  GDNLDCY+QRP+G +L   S+
Sbjct:  213 VISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.116e-34
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 3
Query:    3 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 314
            V+SFKSA+WFWMT Q PKPSCH+VII  W+PSA +  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  226 VISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.715e-34
Identity = 60/104 (57.69%), Postives = 78/104 (75.00%), Query Frame = 3
Query:    3 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 314
            V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  +  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  215 VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.157e-34
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 3
Query:    3 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 314
            V+SFKSAIWFWMTAQ PKPSCH+VI   W PSA +  A RLPGYG+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PGDN+DC NQ+ +   L+ ++M
Sbjct:  231 VVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of FC872292 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.157e-34
Identity = 59/104 (56.73%), Postives = 78/104 (75.00%), Query Frame = 3
Query:    3 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 314
            ++SFKSAIWFWMT Q PKPSCH+VI   W+PS  +  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  213 IISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316          
The following BLAST results are available for this feature:
BLAST of FC872292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHIT_CARPA2.500e-3562.50Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI1_SOLTU5.569e-3558.65Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHIB_POPTR1.620e-3463.00Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIB_ARATH1.620e-3464.21Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_TOBAC2.116e-3458.65Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI2_PEA2.116e-3460.58Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_TOBAC2.116e-3459.62Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI3_SOLTU4.715e-3457.69Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_TOBAC6.157e-3458.65Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_SOLTU6.157e-3456.73Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AF04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1AF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872292 ID=FC872292; Name=FC872292; organism=Citrus clementina; type=EST; length=509bp
GGGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCA
CCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGC
AATTGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATA
TAATCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGACGCTGTACGC
AACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCC
TGGTGACAATCTTGATTGCTACAACCAACGGCCTTATGGCCTTAATCTGA
TGGCACAATCTATGTGATCATCATGATCAAGGTTTTAGTAAAATAAGCTT
AATAAAAGCTACTTAATAAAAACTTTAGATGTCACAGTTGTAGGTGGACA
ACTAAATTATTCGTTTGTTACGCTCTTATTGCAAGTAAATTAAATAAGAC
TGATCCAACATGGATCAATGAGTCTTCTCCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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