FC872306

Overview
NameFC872306
Unique NameFC872306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_THESM (Tyrosyl-tRNA synthetase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=tyrS PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.652e-27
Identity = 69/186 (37.10%), Postives = 109/186 (58.60%), Query Frame = 1
Query:    4 GMDQRILNVLAREYCDDIK--------RKNKPIILSHHMLPGLQQ----------------GQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDK-KFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVK 486
            GMDQR  +V+ARE  + +K        +K KPI + HH+L GLQ+                 Q KMSKS P SA+++ D   E+  K++KA+CP   V  NP L++ ++IIF  +  +F + R    GG+ T+ ++EEL  D+ EG LHP DLK ++++ + ++L+PVR +F K+    +L+K V+
Sbjct:  187 GMDQRKAHVIAREVAEKLKYHPLVWDGKKVKPIAVHHHLLLGLQEPPKWPIEGEEEFKEIKAQMKMSKSKPYSAVFIHDTPEEIKQKLRKAFCPAGEVNYNPVLDWAEHIIFREEPTEFTIHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLVELLKPVREYFEKHPEPLELMKSVQ 372          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_THEON (Tyrosyl-tRNA synthetase OS=Thermococcus onnurineus (strain NA1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.652e-27
Identity = 68/186 (36.56%), Postives = 109/186 (58.60%), Query Frame = 1
Query:    4 GMDQRILNVLAREYCDDIK--------RKNKPIILSHHMLPGLQQG----------------QEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDK-KFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVK 486
            GMDQR  +V+A E    +K         K KP+ L HH+L GLQ+                 Q KMSKS P SA+++ D   E+  K++KA+CP + V+ NP L++ +YIIF  +  +F + R    GG+ T+ ++EEL  D+ EG LHP DLK ++++ + ++L+PVR++F K+    +L++ +K
Sbjct:  187 GMDQRKAHVIAIEVAQKLKYHAIEHNGEKLKPVALHHHLLLGLQEPPVWPIESEEQYKELKTQMKMSKSKPYSAVFIHDTPEEIKQKLRKAFCPAREVKYNPVLDWAEYIIFREEPTEFTIHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLIELLKPVRDYFEKHPEPLELMREIK 372          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_PYRKO (Tyrosyl-tRNA synthetase OS=Pyrococcus kodakaraensis GN=tyrS PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.652e-27
Identity = 68/186 (36.56%), Postives = 108/186 (58.06%), Query Frame = 1
Query:    4 GMDQRILNVLAREYCDDIK--------RKNKPIILSHHMLPGLQQG----------------QEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDK-KFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVK 486
            GMDQR  +V+A E    +K         K KP+ L HH+L GLQ+                 Q KMSKS P SA+++ D   E+  K++KA+CP + V+ NP L++ +YIIF  +  +F + R    GG+ T+ ++EEL  D+ EG LHP DLK ++++ + ++L+PVR +F K+    +L++ +K
Sbjct:  187 GMDQRKAHVIAIEVAQKLKYHPLEWKGEKLKPVALHHHLLLGLQEPPVWPIESEEQFKELKTQMKMSKSKPYSAVFIHDSPEEIKQKLRKAFCPAREVKYNPVLDWAEYIIFREEPTEFTIHRPAKFGGDVTYTTFEELKKDFAEGKLHPLDLKNAVAEYLIELLKPVREYFEKHPEPLELMREIK 372          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_PYRHO (Tyrosyl-tRNA synthetase OS=Pyrococcus horikoshii GN=tyrS PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.157e-27
Identity = 67/186 (36.02%), Postives = 107/186 (57.53%), Query Frame = 1
Query:    4 GMDQRILNVLAREYCDDIK--------RKNKPIILSHHMLPGLQQ----------------GQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDK-KFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVK 486
            GMDQR  +V+A E    ++         K KP+ + HH+L GLQ+                 Q KMSKS P SA+++ D   E+  K++KA+CP + V  NP L++++YIIF  +  +F V R    GG+ T+ ++EEL  D+ EG LHP DLK ++++ +  +L+P+R +F K+    +L++ VK
Sbjct:  187 GMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRKAFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKHPEPLELMRSVK 372          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_THEGJ (Tyrosyl-tRNA synthetase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tyrS PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.276e-27
Identity = 69/186 (37.10%), Postives = 106/186 (56.99%), Query Frame = 1
Query:    4 GMDQRILNVLAREYCDDIK--------RKNKPIILSHHMLPGLQQG----------------QEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDK-KFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVK 486
            GMDQR  +V+A E    +K         K KP+ L HH+L GLQ+                 Q KMSKS P SA+++ D   E+  K++KA+CP + V  NP L++ +YIIF  +  +F + R    GG+ T+ + EEL  D+ EG LHP DLK ++++ + ++L+PVR +F K+    +L++ VK
Sbjct:  187 GMDQRKAHVIAIEVAQKLKYHPLEWKGEKLKPVALHHHLLLGLQEPPVWPIESEEQFKELKTQMKMSKSKPYSAVFIHDSPEEIRQKLRKAFCPAREVRYNPVLDWAEYIIFREEPTEFTIHRPAKFGGDVTYTTSEELKRDFAEGKLHPLDLKNAVAEYLIELLKPVREYFEKHPEPLELMREVK 372          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_SULSO (Tyrosyl-tRNA synthetase OS=Sulfolobus solfataricus GN=tyrS PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.197e-27
Identity = 66/177 (37.29%), Postives = 99/177 (55.93%), Query Frame = 1
Query:    1 GGMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE----------------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRV 483
            GG DQR  ++LAR+  + + +K K + +   +L GLQ GQ                 KMSKS P SAI++ D   +V  KI  AYCP  + E NP L+ +KYIIFP      +ER    GG+  F+ YEEL   Y EG +HP DLK + ++ +N+IL+P+R    K    +++++++
Sbjct:  185 GGTDQRKAHMLARDVAEKMGKK-KIVSIHTPLLVGLQGGQRMNITEGMEEDDIQAEIKMSKSKPESAIFVNDSREDVERKIMGAYCPKGVAENNPILQILKYIIFPRYNFVKIERDIKYGGDVEFKDYEELERTYIEGKIHPMDLKKTTARKLNEILEPIRKSLEKKPEFEEMIQKI 360          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYYC_XENLA (Tyrosyl-tRNA synthetase, cytoplasmic OS=Xenopus laevis GN=yars PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.071e-26
Identity = 65/149 (43.62%), Postives = 91/149 (61.07%), Query Frame = 1
Query:    1 GGMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFN 447
            GG+DQR +   A +Y   +    K I L + M+PGL     KMS S+  S I + D  A+V  K+KKA+C P  VE N  L ++++++FP   +FVV R E  GGNKT+  +E L  D+ E  +HPGDLK S+ KA+NK+L P+R  FN
Sbjct:  184 GGVDQRKIFTFAEKYLPALGYA-KRIHLMNPMVPGLTGA--KMSSSEEESKIDLLDSPADVKKKLKKAFCEPGNVENNGVLSFVRHVLFPLKSEFVVLRDEKFGGNKTYTDFETLEKDFAEELVHPGDLKASVEKALNKLLHPIREKFN 329          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYYC_XENTR (Tyrosyl-tRNA synthetase, cytoplasmic OS=Xenopus tropicalis GN=yars PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.398e-26
Identity = 64/149 (42.95%), Postives = 91/149 (61.07%), Query Frame = 1
Query:    1 GGMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFN 447
            GG+DQR +   A +Y   +    K I L + M+PGL     KMS S+  S I + D  A+V  K+KKA+C P  +E N  L ++++++FP   +FVV R E  GGNKT+  +E L  D+ E  +HPGDLK S+ KA+NK+L P+R  FN
Sbjct:  184 GGVDQRKIFTFAEKYLPALGYA-KRIHLMNPMVPGLTGA--KMSSSEEESKIDLLDSPADVKKKLKKAFCEPGNIENNGVLSFVRHVLFPLKSEFVVLRDEKFGGNKTYTDFETLEKDFTEQLVHPGDLKASVEKALNKLLDPIREKFN 329          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_PYRFU (Tyrosyl-tRNA synthetase OS=Pyrococcus furiosus GN=tyrS PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.826e-26
Identity = 62/186 (33.33%), Postives = 109/186 (58.60%), Query Frame = 1
Query:    4 GMDQRILNVLAREYCDDIK--------RKNKPIILSHHMLPGLQQ----------------GQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDK-KFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVK 486
            GMDQR  +V+A E  + ++         K KP+ + HH+L GLQ+                 + KMSKS P SA+++ D   E+  K++KA+CP + V+ NP L++++Y++F  +  +F + R    GG+ T+ ++EEL  D+ EG LHP DLK ++++ +  +L+P+R +F ++    +L+K V+
Sbjct:  187 GMDQRKAHVIAIEVAEKLRYHPIIHNGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAEMKMSKSKPYSAVFIHDSPEEIREKLRKAFCPAREVKYNPVLDWVEYLVFREEPTEFTIHRPAKYGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLIDLLEPIRKYFERHPEPLELMKSVQ 372          
BLAST of FC872306 vs. ExPASy Swiss-Prot
Match: SYY_PYRCJ (Tyrosyl-tRNA synthetase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.826e-26
Identity = 70/188 (37.23%), Postives = 104/188 (55.32%), Query Frame = 1
Query:    1 GGMDQRILNVLAREYCDDIK--------RKNKPIILSHHMLPGL----------QQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKK--FVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVKGYRVTR 504
            GG+DQR  ++LAR+  D I+        ++ KP+ L H +LP L          +  + KMSKS P SAI++ D   E+  K+ KAYCPP+ VE NP LE ++   F  ++K   V++R E  GG+     YEEL A Y+EG +HP DLK   ++A+  +L+PV   F        LL+ ++   +TR
Sbjct:  187 GGIDQRRAHILARQVADKIRFYPLTVDGKRIKPVALHHRLLPALNISSKPSSKEELSELKMSKSIPQSAIFVHDSPEEIRQKVAKAYCPPREVEYNPVLELLRIAAFREERKTPLVIKRPEKYGGDVEVWKYEELEAMYKEGKIHPADLKAVTAEALAALLEPVYKFF--QGPGAKLLEEMRNIAITR 372          
The following BLAST results are available for this feature:
BLAST of FC872306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
SYY_THESM1.652e-2737.10Tyrosyl-tRNA synthetase OS=Thermococcus sibiricus ... [more]
SYY_THEON1.652e-2736.56Tyrosyl-tRNA synthetase OS=Thermococcus onnurineus... [more]
SYY_PYRKO1.652e-2736.56Tyrosyl-tRNA synthetase OS=Pyrococcus kodakaraensi... [more]
SYY_PYRHO2.157e-2736.02Tyrosyl-tRNA synthetase OS=Pyrococcus horikoshii G... [more]
SYY_THEGJ6.276e-2737.10Tyrosyl-tRNA synthetase OS=Thermococcus gammatoler... [more]
SYY_SULSO8.197e-2737.29Tyrosyl-tRNA synthetase OS=Sulfolobus solfataricus... [more]
SYYC_XENLA1.071e-2643.62Tyrosyl-tRNA synthetase, cytoplasmic OS=Xenopus la... [more]
SYYC_XENTR1.398e-2642.95Tyrosyl-tRNA synthetase, cytoplasmic OS=Xenopus tr... [more]
SYY_PYRFU1.826e-2633.33Tyrosyl-tRNA synthetase OS=Pyrococcus furiosus GN=... [more]
SYY_PYRCJ1.826e-2637.23Tyrosyl-tRNA synthetase OS=Pyrobaculum calidifonti... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DD12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2DD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872306 ID=FC872306; Name=FC872306; organism=Citrus clementina; type=EST; length=692bp
GGGGGCATGGATCAGCGGATTTTAAATGTACTTGCAAGAGAGTACTGTGA
TGACATCAAGAGGAAAAACAAGCCCATCATTTTGTCGCATCATATGCTTC
CTGGACTTCAGCAAGGACAAGAAAAGATGTCAAAGAGTGATCCATCATCT
GCCATCTACATGGAGGATGAGGAGGCTGAAGTCAATGTGAAAATAAAGAA
AGCATACTGCCCTCCAAAGATTGTTGAAGGAAATCCATGTCTGGAGTACA
TAAAATACATCATCTTTCCATGGGACAAAAAATTTGTGGTGGAGCGTAGC
GAAGCCAATGGTGGCAACAAGACCTTCGAAAGCTATGAAGAACTTGTTGC
TGATTATGAAGAAGGAAATTTACATCCTGGGGATCTGAAACCTTCTCTGT
CTAAAGCAATAAATAAGATACTGCAGCCTGTGCGTAATCATTTCAACAAG
AATGCTAATGCCCAGGATCTGCTGAAACGTGTTAAGGGTTACAGAGTTAC
CAGGTGAGATGTGCAAGGGATGTCTGCTTGTTGCCTTTGGTGTCTTTGCT
AACAGAGAAGAAACTTCCTTTTGATTAAAGTTAAATATGACGTTCGGTTA
CGATCATGAATACTAGTAGAAATTAACAAAAATTAGTTGTTGAAATTATA
ATTTATACTATTCTCAGCTTGGGGATTGTTTAAAAAAAAAAA
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