FC872349

Overview
NameFC872349
Unique NameFC872349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig610 contig Ccv1_Contig610:127..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872349 vs. ExPASy Swiss-Prot
Match: UMP1_ARATH (Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.008e-23
Identity = 67/141 (47.52%), Postives = 73/141 (51.77%), Query Frame = 1
Query:    7 GGGTPPPQSNYGGTPPPQ---SNYGGTPPPQNNYGG-------APPPQNNYGGTPPPQNYGGTPPQNNYGGTPPPQNNYGGMQPPPNYNSG---NMGGMPPNARWSGNTPGNMNQNADG-----PSFQNSYTPRQ*N*GMP 375
            GG  PPP    G  PPP     NYG  PPP NN GG         PPQNN GG  PPQNYGGTPP  NYGG  PP NN GG  PPPNY  G     G +PP  ++ G  P N N    G     P +QN+Y P +   G P
Sbjct:  258 GGSAPPPPHMGGSAPPPPHMGQNYG--PPPPNNMGGPRHPPPYGAPPQNNMGGPRPPQNYGGTPPP-NYGGA-PPANNMGG-APPPNYGGGPPPQYGAVPP-PQYGGAPPQNNNYQQQGSGMQQPQYQNNYPPNRDGSGNP 392          
BLAST of FC872349 vs. ExPASy Swiss-Prot
Match: MCA1A_ASPFU (Metacaspase-1A OS=Aspergillus fumigatus GN=casA PE=3 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 42/89 (47.19%), Postives = 47/89 (52.81%), Query Frame = 1
Query:   28 QSNYGGTPPPQSNYGGTPPPQNNYG-GAPPPQNNYGGTPPPQNYGGTPPQNNYGGTPPPQNN--YGGMQPPPN-----YNSGNMGGMPP 270
            QS+YGG  P Q+ Y    PP N YG G P PQ  YG  PP   YG   P + YG  PPP  N  YGG QP  N     Y+ G+ GG PP
Sbjct:    8 QSSYGGGYPGQA-YREQHPPPNPYGYGQPSPQPGYGAPPPHNGYG--QPPSGYGQPPPPTGNAVYGGRQPGMNQYQNTYSHGHQGGPPP 93          
BLAST of FC872349 vs. ExPASy Swiss-Prot
Match: MCA1A_ASPFC (Metacaspase-1A OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=casA PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 42/89 (47.19%), Postives = 47/89 (52.81%), Query Frame = 1
Query:   28 QSNYGGTPPPQSNYGGTPPPQNNYG-GAPPPQNNYGGTPPPQNYGGTPPQNNYGGTPPPQNN--YGGMQPPPN-----YNSGNMGGMPP 270
            QS+YGG  P Q+ Y    PP N YG G P PQ  YG  PP   YG   P + YG  PPP  N  YGG QP  N     Y+ G+ GG PP
Sbjct:    8 QSSYGGGYPGQA-YREQHPPPNPYGYGQPSPQPGYGAPPPHNGYG--QPPSGYGQPPPPTGNAVYGGRQPGMNQYQNTYSHGHQGGPPP 93          
BLAST of FC872349 vs. ExPASy Swiss-Prot
Match: FH12_ORYSJ (Formin-like protein 12 OS=Oryza sativa subsp. japonica GN=FH12 PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 45/105 (42.86%), Postives = 48/105 (45.71%), Query Frame = 1
Query:   10 GGTPPPQSNYGGTPPPQSNYGG-----TPPPQNNYGG-----APPPQNNYGGTPPPQNYGG-------TPPQNNYGGTPPPQNNYGGMQPPPNYNSGNMG-GMPP 270
            G  PPP S   G PPP    GG      PPP    GG     APP     GG PPP   GG        PP    GGTPPP N +GG+ PPP    G+ G G PP
Sbjct: 1096 GVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPP-NAHGGVAPPPPPPRGHGGVGGPP 1199          
The following BLAST results are available for this feature:
BLAST of FC872349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UMP1_ARATH1.008e-2347.52Uncharacterized protein At3g15000, mitochondrial O... [more]
MCA1A_ASPFU1.510e-1147.19Metacaspase-1A OS=Aspergillus fumigatus GN=casA PE... [more]
MCA1A_ASPFC1.510e-1147.19Metacaspase-1A OS=Aspergillus fumigatus (strain CE... [more]
FH12_ORYSJ5.737e-1142.86Formin-like protein 12 OS=Oryza sativa subsp. japo... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2DF10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2DF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872349 ID=FC872349; Name=FC872349; organism=Citrus clementina; type=EST; length=655bp
CGGGCCGGGGGAGGGACGCCGCCACCTCAGAGCAACTATGGAGGAACGCC
GCCACCCCAGAGCAACTATGGAGGAACGCCGCCACCGCAGAACAACTATG
GAGGAGCGCCGCCACCGCAGAACAACTATGGAGGAACGCCGCCGCCACAG
AACTATGGAGGAACACCACCACAGAACAACTATGGAGGAACTCCACCGCC
ACAAAATAATTATGGAGGAATGCAGCCACCTCCTAATTACAACTCAGGGA
ACATGGGAGGAATGCCGCCGAATGCCAGATGGTCAGGCAACACGCCTGGG
AATATGAACCAGAATGCAGATGGTCCTTCCTTTCAGAATAGCTACACACC
AAGACAGTGAAATTGAGGCATGCCTGGTGGAAACCTTTACCAGGCTTGAA
ACATGCCCAGACATATTGTGTTGTACTCCTTCCCCTGAGTAGACTACTTT
TGGCATGTTGTAGATAAGTATGGATGATAGCCTGGATCTTCGGTTAATGT
TGTCAATGTTCAGTGTTTTCTAGACTTCAGGAATTTTATTGATGCTATCT
TCTGGCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGGTAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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