FC872391

Overview
NameFC872391
Unique NameFC872391
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length836
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9529 contig Ccv1_Contig9529:1..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC872391 vs. ExPASy Swiss-Prot
Match: Y5566_ARATH (Uncharacterized protein At5g65660 OS=Arabidopsis thaliana GN=At5g65660 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.386e-47
Identity = 96/137 (70.07%), Postives = 106/137 (77.37%), Query Frame = 3 
Query:  141 MEN-QDFSPPHGDASRPSLGFPLGTALLLIVIFSLSGIFSCCYHWDKVRSLRRSFSEHADPEADNEGSPSKSKAAHMDLKKNQSQSLPVLMPGDQIPKFIALPCPCEPPRAEKIVVKVQKPPKLP-----RFPVPLY 533
            MEN QDFSPPH DASRPSLGFPLGTALLLI+IFSLSGIFSCCYHWDK RSLRRS + +  P AD E +P K K    ++KK Q+ S+PVLMPGD  PKFIALPCPC PPR EK+ V VQ PP+ P     RFPVPLY
Sbjct:    1 MENTQDFSPPHMDASRPSLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLA-NGRPSADIESNPYKPKPPFPEMKKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQSPPVKPARFPVPLY 136
The following BLAST results are available for this feature:
BLAST of FC872391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5566_ARATH3.386e-4770.07Uncharacterized protein At5g65660 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1BC03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872391 ID=FC872391; Name=FC872391; organism=Citrus clementina; type=EST; length=836bp
GGGGGCACTTCATTAATTATTTTCTCCAGCTTTAGCCCTTCACTAAAACT
CTCTGTCTCCATATTCTGCTCTGTTCTTTCCCTTGTTACATATGATAGAA
GGATCAAATTTTCCATCAAGCAATAGTGGGATTGTATGCAATGGAGAATC
AGGATTTTTCACCACCCCACGGGGATGCATCTCGGCCGTCCCTTGGATTC
CCTCTTGGCACAGCACTCCTCTTGATTGTCATATTCAGCTTGAGTGGCAT
CTTCTCCTGCTGCTACCACTGGGACAAGGTTAGATCACTCCGTCGGTCGT
TCTCCGAGCATGCGGATCCCGAGGCTGACAATGAAGGATCGCCCTCAAAA
TCCAAGGCTGCCCACATGGATTTAAAGAAAAATCAGAGCCAAAGCTTGCC
AGTGTTAATGCCAGGCGACCAGATCCCAAAGTTTATAGCATTGCCATGTC
CCTGTGAGCCTCCTCGAGCCGAGAAGATTGTTGTAAAAGTGCAAAAACCG
CCAAAGCTGCCACGTTTTCCGGTGCCTTTGTATTAGCAGTTACAGAGGTT
GTTCACTTGGTGTATATAATCTCATATTTACAATTTAATTTAGTAAAAAG
AAGAGAAAGAAATTAGCTTTTACCATCATTTTTAACCTTCCCCAGGTAGA
ACTTTTAGGTCATCAGTTTGTAAACCACAACATTTTCTTCATATGTAATA
GTAAAACTCAGCCAATTTGAAGAGTTAAAACGCTTGCGTTTTTTCTTCTG
TCTTTTAATCCACTCTCATTTAAACCCAAAACCAATATAGCTGCGTGCAA
TTTGTGACGAAAAAAAAAAAAAAAAAAAAAAAAAAA
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