FC872437

Overview
NameFC872437
Unique NameFC872437
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1049 contig Ccv1_Contig1049:277..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC872437 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.226e-17
Identity = 43/134 (32.09%), Postives = 76/134 (56.72%), Query Frame = 3 
Query:  168 REVKAMKGESVGYGNDYFGLLLKAYHDPDMTKR-------ISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRPG 548
            + +KA+K    G  +D  G+LL++ +  ++ K+       +S++ +I+ECK FY AG E                 +WQE+ REEVL+ FG+  P  + +  LK +SM++ E LRLYPP +++++ V ++ + G
Sbjct:  279 KRMKALKAGEPGE-DDLLGVLLES-NIQEIQKQGNKKDGGMSINDVIEECKLFYFAGQETTGVLLTWTTILLSKHPEWQERAREEVLQAFGKNKPEFERLNHLKYVSMILYEVLRLYPPVIDLTKIVHKDTKLG 410

HSP 2 Score: 32.3426 bits (72), Expect = 6.226e-17
Identity = 10/27 (37.04%), Postives = 18/27 (66.67%), Query Frame = 1 
Query:  544 LGKYILPANMELVIPILAIHHDPQIWG 624
            LG Y +PA  ++++P + +H +  IWG
Sbjct:  409 LGSYTIPAGTQVMLPTVMLHREKSIWG 435
The following BLAST results are available for this feature:
BLAST of FC872437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C72A1_CATRO6.226e-1732.09Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3AB12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872437 ID=FC872437; Name=FC872437; organism=Citrus clementina; type=EST; length=656bp
GGTAAGCATATTCAATAAGCTTTCCAATATGTCTCTCATCGCCTCCAGAA
ATGCCTATAAGTTTAAAATCTCTCTTATTGGAGTTTTTGTGAAAACATCT
GATGATGTTGAAGCGGACAAACTCGAACAGGGGATTCGAGTTTCAATCAT
AAAAATGATGAAGTACACGAGAAGTGAAGGCGATGAAGGGAGAATCAGTA
GGATATGGAAATGATTATTTTGGATTGCTCCTGAAGGCTTATCACGATCC
TGATATGACCAAGAGAATCTCTCTTGATGTACTAATTGATGAGTGCAAGA
CATTCTATATTGCAGGACATGAAACAACCACAAAATTACTTACCTGGACA
ATTTTACTTCTAGCAACGCACACAGATTGGCAAGAGAAATTAAGAGAGGA
AGTGCTTGAATTATTTGGCCAGCAAAATCCGACACCAGATGGCATAGGAA
AATTGAAAACAATGAGCATGGTTATAAATGAATCTTTAAGGCTGTATCCG
CCAGCTGTTAACATTTCGAGGAATGTTGAAAGGGAAGTGAGACCTGGGGA
AGTACATTCTTCCAGCNAATATGGAACTTGTTATTCCAATTCTGGCAATT
CACCATGACCCTCAAATTTGGGGGAGAAGATGTTGATATTTTTCAGCCAG
AGAGAT
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