FC872467

Overview
NameFC872467
Unique NameFC872467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872467_ssr30 microsatellite FC872467_ssr30:30..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9955 contig Ccv1_Contig9955:1..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872467 vs. ExPASy Swiss-Prot
Match: TXN4A_MOUSE (Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.640e-69
Identity = 119/142 (83.80%), Postives = 134/142 (94.37%), Query Frame = 1
Query:   40 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFGNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 465
            MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYLVDI+EVPDFN MYELYDP TVMFFF NKHIMIDLGTGNNNKINWA++DKQE +DI+ETVYRGARKGRGLV++PKDYSTKYRY
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 142          
BLAST of FC872467 vs. ExPASy Swiss-Prot
Match: TXN4A_HUMAN (Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.640e-69
Identity = 119/142 (83.80%), Postives = 134/142 (94.37%), Query Frame = 1
Query:   40 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFGNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 465
            MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYLVDI+EVPDFN MYELYDP TVMFFF NKHIMIDLGTGNNNKINWA++DKQE +DI+ETVYRGARKGRGLV++PKDYSTKYRY
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 142          
BLAST of FC872467 vs. ExPASy Swiss-Prot
Match: DIMI_SCHPO (Mitosis protein dim1 OS=Schizosaccharomyces pombe GN=dim1 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.392e-60
Identity = 107/142 (75.35%), Postives = 125/142 (88.03%), Query Frame = 1
Query:   40 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFGNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 465
            MSY LPHLHSGW VDQAIL+E+ERLVVIRFG D DE C++ DEVL  +AE + N AVIYLVDI EVPDFN MYELYD +T+MFF+ NKH+MIDLGTGNNNKINW L+DKQE IDI+ET++RGARKG+GLVI+PKDYST++RY
Sbjct:    1 MSYFLPHLHSGWHVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYLVDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIFRGARKGKGLVISPKDYSTRHRY 142          
BLAST of FC872467 vs. ExPASy Swiss-Prot
Match: DIB1_ASHGO (Spliceosomal protein DIB1 OS=Ashbya gossypii GN=DIB1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.462e-50
Identity = 91/138 (65.94%), Postives = 111/138 (80.43%), Query Frame = 1
Query:   43 SYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFGNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 456
            S  LPHLHSGW VDQAI+ EEERLVVIRFG D D +CM MDE+L S+AE + NFA IY+ D +EVPDFN MYEL DP TVMFF+ NKH+  D GTGNNNK+N+ + +KQE IDI+ETV+RGAR+ +GLV++P DY+ K
Sbjct:    3 SVFLPHLHSGWHVDQAIVTEEERLVVIRFGSDSDRSCMLMDEILYSIAEKVVNFAAIYVCDTTEVPDFNEMYELQDPMTVMFFYKNKHMRCDFGTGNNNKMNFVVDNKQEMIDIIETVFRGARRNKGLVVSPYDYNYK 140          
BLAST of FC872467 vs. ExPASy Swiss-Prot
Match: DIB1_YEAST (Spliceosomal protein DIB1 OS=Saccharomyces cerevisiae GN=DIB1 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.351e-47
Identity = 90/138 (65.22%), Postives = 110/138 (79.71%), Query Frame = 1
Query:   43 SYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFGNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 456
            S LLP L +GW VDQAI+ E +RLVVIRFG   D  CM MDE+LSS+AE ++NFAVIYL DI EV DF+ MYEL DP TVMFF+ NKH+M D GTGNNNK+N+ + DKQE IDI+ET++RGARK +GLV++P DY+ K
Sbjct:    3 SVLLPQLRTGWHVDQAIVTETKRLVVIRFGRKNDRQCMIMDELLSSIAERVRNFAVIYLCDIDEVSDFDEMYELTDPMTVMFFYHNKHMMCDFGTGNNNKLNFIVDDKQEMIDILETIFRGARKNKGLVVSPYDYNHK 140          
BLAST of FC872467 vs. ExPASy Swiss-Prot
Match: TXN4A_DICDI (Thioredoxin-like protein 4A homolog OS=Dictyostelium discoideum GN=txnl4a PE=3 SV=4)

HSP 1 Score: 186.422 bits (472), Expect = 1.144e-46
Identity = 82/132 (62.12%), Postives = 111/132 (84.09%), Query Frame = 1
Query:   70 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFGNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 465
            G  + + +  EE+R+VVIRFGHD++  CM+ D++L+S+AE +KN AVIY+VDI+EVPD N+MYELYD    MFF+ NKHIM+DLGTGNNNKINWAL +KQ+ IDI+ETVY+GARKG+GLV +P+D+S +Y++
Sbjct:    2 GGLLIKQLSTEEDRVVVIRFGHDYNPECMKQDDILASIAEKVKNMAVIYVVDITEVPDLNSMYELYDDCPTMFFYRNKHIMVDLGTGNNNKINWALTNKQDMIDIIETVYKGARKGKGLVNSPRDFSPQYKF 133          
BLAST of FC872467 vs. ExPASy Swiss-Prot
Match: DIB1_CANGA (Spliceosomal protein DIB1 OS=Candida glabrata GN=DIB1 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.681e-46
Identity = 86/135 (63.70%), Postives = 106/135 (78.52%), Query Frame = 1
Query:   52 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFGNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 456
            L +LHSGW VDQAI+ EEERLVV+RFG   D  CM MDE+L+SVAE ++NF  IYL DI EVPDFN MYEL D   +MFF+ NKH+M D GTGNNNK+N+   DKQE IDI+ET++RGARK +G+V++P DY+ K
Sbjct:    4 LYNLHSGWHVDQAIVTEEERLVVVRFGRTADRECMLMDEMLASVAEKVRNFVAIYLCDIDEVPDFNDMYELNDNMCLMFFYKNKHMMCDFGTGNNNKMNFLPDDKQELIDIMETIFRGARKNKGIVVSPYDYNHK 138          
BLAST of FC872467 vs. ExPASy Swiss-Prot
Match: TXN4B_HUMAN (Thioredoxin-like protein 4B OS=Homo sapiens GN=TXNL4B PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26
Identity = 60/149 (40.27%), Postives = 96/149 (64.43%), Query Frame = 1
Query:   40 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL-YDPSTVMFFFGNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY*VLVQN 483
            MS+LLP L S   VDQAI +  E+++V+RFG D D  C+Q+D++LS  +  +   A IYLVD+ +   +   +++ Y PSTV FFF  +H+ +D G+ ++ K   + K KQ+FID++E +YRGA +G+ +V +P D     +Y +L Q+
Sbjct:    1 MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNIPKYDLLYQD 148          
BLAST of FC872467 vs. ExPASy Swiss-Prot
Match: TXN4B_MOUSE (Thioredoxin-like protein 4B OS=Mus musculus GN=Txnl4b PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.523e-25
Identity = 60/149 (40.27%), Postives = 93/149 (62.42%), Query Frame = 1
Query:   40 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL-YDPSTVMFFFGNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY*VLVQN 483
            MS+LLP L S   VDQAI +  E+ +V+RFG D D  C+Q+D++LS  +  +   A IYL D+   P +   +++ Y PSTV FFF  +H+  D G+ ++ K   + K KQ+FID++E +YRGA +G+ +V +P D     +Y +L Q+
Sbjct:    1 MSFLLPKLTSKKEVDQAIKSTAEKGLVLRFGRDEDPVCLQLDDILSKTSADLSKMAAIYLGDVDHTPVYTQYFDISYIPSTV-FFFNGQHMKGDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNVPKYDLLYQD 148          
The following BLAST results are available for this feature:
BLAST of FC872467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TXN4A_MOUSE1.640e-6983.80Thioredoxin-like protein 4A OS=Mus musculus GN=Txn... [more]
TXN4A_HUMAN1.640e-6983.80Thioredoxin-like protein 4A OS=Homo sapiens GN=TXN... [more]
DIMI_SCHPO1.392e-6075.35Mitosis protein dim1 OS=Schizosaccharomyces pombe ... [more]
DIB1_ASHGO8.462e-5065.94Spliceosomal protein DIB1 OS=Ashbya gossypii GN=DI... [more]
DIB1_YEAST1.351e-4765.22Spliceosomal protein DIB1 OS=Saccharomyces cerevis... [more]
TXN4A_DICDI1.144e-4662.12Thioredoxin-like protein 4A homolog OS=Dictyosteli... [more]
DIB1_CANGA9.681e-4663.70Spliceosomal protein DIB1 OS=Candida glabrata GN=D... [more]
TXN4B_HUMAN1.717e-2640.27Thioredoxin-like protein 4B OS=Homo sapiens GN=TXN... [more]
TXN4B_MOUSE5.523e-2540.27Thioredoxin-like protein 4B OS=Mus musculus GN=Txn... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3AD01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AD01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872467 ID=FC872467; Name=FC872467; organism=Citrus clementina; type=EST; length=669bp
GGGGGTAGAGAAGAGAGAGGGAGAGAGAAAGAGAGAGAGATGTCGTACTT
GCTACCGCACTTGCACTCAGGATGGGCAGTAGATCAGGCCATCCTGGCTG
AGGAAGAGCGTCTCGTGGTCATCCGTTTCGGCCACGACTGGGACGAAACC
TGTATGCAGATGGATGAAGTGCTGTCATCAGTTGCCGAGACAATTAAGAA
TTTTGCTGTCATCTACCTCGTGGACATTTCAGAGGTGCCTGATTTTAACA
CAATGTATGAGCTTTACGATCCCTCAACCGTCATGTTCTTCTTCGGAAAC
AAGCACATTATGATTGATCTTGGAACTGGAAATAACAACAAGATCAACTG
GGCTCTTAAGGACAAGCAGGAGTTCATAGACATTGTTGAGACTGTCTACC
GAGGGGCAAGGAAGGGCCGCGGTCTAGTAATTGCACCTAAGGATTATTCC
ACCAAGTACCGCTACTGAGTACTTGTGCAAAATTGTAATTCATTTGTAAG
ATTATCATTTGAAACCTATTGTGTGAAAGTTGTCTTCAAAAGTCAATGGA
GTGAGAACGCATTGATCTATCAATGAACAGAGAACACCCCCTTTAATGAA
GTGTTCAACCTTGAATTTATATCACAGTTGAGAGACCCGTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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