FC872504

Overview
NameFC872504
Unique NameFC872504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10775 contig Ccv1_Contig10775:240..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.842e-42
Identity = 84/110 (76.36%), Postives = 88/110 (80.00%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQLS 334
            V P   CQ            ESIYG+KFA ENF+KKHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRT K VV+  CGQLS
Sbjct:   63 VIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.685e-40
Identity = 80/110 (72.73%), Postives = 86/110 (78.18%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQLS 334
            V P   CQ            ESIYG+KF  ENF+KKHTGPG+LSMANAGPGTNGSQFF+CT KT WLDGKHVVFGQVVEGMDVV+AIEKVGS SG+T KPV IA CGQLS
Sbjct:   41 VIPGFMCQGGDFTAGNGTGGESIYGAKFKDENFIKKHTGPGVLSMANAGPGTNGSQFFICTEKTAWLDGKHVVFGQVVEGMDVVRAIEKVGSQSGQTKKPVKIADCGQLS 150          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.875e-40
Identity = 81/109 (74.31%), Postives = 86/109 (78.90%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            V P   CQ            ESIYG+KF  ENFVKKHTGPGILSMANAGPGTNGSQFF+CTAKTEWL+GKHVVFGQVVEGMDV+K  E VGSSSGR +KPVVIA CGQL
Sbjct:   63 VIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.427e-39
Identity = 79/110 (71.82%), Postives = 86/110 (78.18%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQLS 334
            V P+  CQ            ESIYGSKF  ENF +KHTGPGILSMANAG  TNGSQFF+CT KT+WLDGKHVVFGQVVEG+DVVKAIEKVGSSSG+  KPVV+A CGQLS
Sbjct:   63 VIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.151e-39
Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQLS 334
            V P+  CQ            ESIYG+KFA ENF+K+HTGPGILSMANAG GTNGSQFF+CT KTEWLDGKHVVFG+V+EGM+VV+ IEKVGS SG+T++PV IA CGQLS
Sbjct:   63 VIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.080e-39
Identity = 78/110 (70.91%), Postives = 85/110 (77.27%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQLS 334
            V P   CQ            ESIYGSKF  ENF+KKHTGPGILSMANAG  TNGSQFF+CT KT WLDGKHVVFGQVVEG++VV+ IEKVGS SGRT+KPVVIA CGQ+S
Sbjct:   64 VIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQIS 173          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.208e-38
Identity = 76/110 (69.09%), Postives = 86/110 (78.18%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQLS 334
            V P+  CQ            ESIYG+KF  ENF +KHTGPGILSMANAG  TNGSQFF+CT KT+WLDGKHVVFGQVVEG+DVVKAIEK+GSSSG+  KPVVIA CG++S
Sbjct:   64 VIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.885e-37
Identity = 75/110 (68.18%), Postives = 83/110 (75.45%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQLS 334
            V P   CQ            ESIYG+KF  ENF+KKHTG GILSMAN+GP TNGSQFF+CT KT WLDGKHVVFGQVV+G+DVVKAIEKVGS SG+T+K V I  CGQLS
Sbjct:   63 VIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQLS 172          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.476e-36
Identity = 76/109 (69.72%), Postives = 79/109 (72.48%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQL 331
            V P   CQ            ESIYG KF  ENFVKKHTGPGILSM NAG  TNGSQFF+CT KT WLDGKHVVFGQVVEGMDVV+ IEKVGS SGRT+K VV   CGQL
Sbjct:   63 VIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171          
BLAST of FC872504 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.636e-35
Identity = 71/110 (64.55%), Postives = 78/110 (70.91%), Query Frame = 2
Query:    5 VSPDLCCQXXXXXXXXXXXXESIYGSKFAVENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIAACGQLS 334
            V P   CQ            +SIYGS+F  ENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SGRT+K +VI  CGQLS
Sbjct:   98 VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 207          
The following BLAST results are available for this feature:
BLAST of FC872504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
CYPH_CATRO6.842e-4276.36Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_ALLCE1.685e-4072.73Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
CYPH_SOLLC2.875e-4074.31Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CP18C_ARATH1.427e-3971.82Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CYPH_LUPLU4.151e-3969.09Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CP19A_ARATH7.080e-3970.91Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CP19B_ARATH1.208e-3869.09Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CP18D_ARATH3.885e-3768.18Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
CYPH_BRANA1.476e-3669.72Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
PPIF_HUMAN3.636e-3564.55Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AF12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872504 ID=FC872504; Name=FC872504; organism=Citrus clementina; type=EST; length=598bp
GGGGGTTTCCCCGGATTTATGTTGCCAGGGGGGTGACTTCACCGCCGGAA
ACGGAACCGGAGGCGAATCAATCTACGGCTCAAAATTCGCCGTTGAGAAC
TTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGG
TCCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGT
GGCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGAC
GTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAA
GCCCGTCGTGATCGCTGCTTGCGGTCAATTGTCTTAGATTTGATCATGAT
AATGATCGCCATCATCACGAGCCGTCTGATCGCGATCGTGATGGTGATTA
TGTTATCTATTATTATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCT
AATTTTCCTGCTATGTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTG
GTTCTTGATGAACTGTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAAT
AAGATAGGGCTTGTCTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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